Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00493 ATGATTTTTTCAAGGATTGGGCGCTCACTCTCGCGCTCTTCACGCGCCAAAGATTATTTGCGCGGCGATGCGAAATTGGGAACCCTTCTCGGAGCTACGCGGACGAATGTGCATTCGGAAGGAATGGAGCTGGGATTAGGGTTTTTTAGGGGATATGTTGCTCATGCTAGAGCTCGTGGAAACGGAATCCTTTCCAGTTTGCCTGATTTTAAGTGTGTTGCGGCAAACCCTAAGATTCATTACCGGTTGTTTTCCAGCGAAGGACCTAAGAAGAAGAATTATGAGAACTTCTATCCCAAGGAGAAGAAGGAAATTCCAAAGGGGGAGGATAAAAAGCATGAGTCTAAAGAAGAGTCAGAGACAAACACAGATGATCATGGAAGTTTTCAAGAGACTTTCATGAAGCAAGTTCAAAATTTTATCACTCCTTTATTGGTGATGGGGCTATTTCTTGGATCATTTAATTTTGGTCCTCGTGAACAGCAACAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAGCCAGGATTAGTAGACCATATTGTTGTGTCGAATAAGTCGGTTGCCAAAATATACGTGAGGAATACTCCTCGTAACCAAACGGAGAGTGAAGTTATCCAGGGAACCCTCCCCGCAAAGGGAACTGGTGGGCAATATAAATATTATTTCAATATTGGAAGTGTGGAATCTTTTGAGGAGAAGTTAGAAGAAGCGCAAGAAGCACTAGGCATTGACCCCCATGATTATGTTCCTGTTACATATTCTTCTGAAATGGTTTGGTACCAGGAATTGATGAGGTTTGCTCCAACACTGTTGCTTTTGGGATCCCTCTTCTATATGGGAAGGAGAATGCAAGGTGGACTTGGTGTTGGCGGCGGCGGCGGTAATAAGGGTGCTCGTGGAATATTTAACATTGGGAAAGCCCATGTTACTAAAGTAGACAAGAATGCGAAAAATAAGGTTTTCTTTAAAGATGTTGCTGGTTGCGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTTAAGAACCCAAAGAAATATGAAGAACTAGGGGCAAAAATCCCCAAGGGTGCTCTCCTGGTTGGTCCTCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACAGCAGGGGAATCTGGTGTTCCATTTCTTTCGATATCTGGTTCAGATTTTATGGAGATGTTTGTTGGTGTTGGACCATCTAGGGTAAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCCCCTAGTATTATATTTATTGACGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGAGGTTTCTCTGGTGCAAATGATGAACGTGAAAGTACATTAAATCAGTTACTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTGGTTGTACTTGCTGGAACAAATAGACCTGATATCTTGGACAAAGCTCTACTTAGGCCAGGGAGATTTGACCGCCAGATAAGCATTGATAAGCCTGATATTAAGGGTCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCACGAGCCTTCATTTTATTCACAAAGGCTTGCAGCCCTTACACCAGGATTTGCGGGAGCAGACATTGCTAATGTTTGCAATGAAGCTGCGCTAATTGCTGCAAGGGGTGAGGAAACACAAGTGACAATGCAACATTTTGAAGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAGGGTGATAAGCAAGCTGGAAAGACGTACTGTAGCTTACCATGAATCGGGTCATGCTGTTGCAGGCTGGTTCTTGGAACATGCCGAACCTTTGTTGAAAGTTACTATAGTTCCTCGTGGCACAGCAGCTCTTGGGTTTGCACAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACACTAGGGGGTCGAGCTGCTGAGCAGATTCTCGTCGGAAGAATCTCAACTGGTGCGCAAAATGACTTGGAAAAAGTGACCAAGATGACATATGCCCAAGTAGCAATCTATGGTTTTAGCGACAAATTGTCTCGTTCTTATGCTGTAATTTCTCTAATTCATTTTTCATTTTCCGTCAAAAGTTTGTTAGAGACTCAACCCACAAAAGTGCCAATGGAAGAAAATAATGGACATGATCAGTTCCATGAAGCTTCAAAGGCTAAGTACGATTGTCTTTTGTTTGATCTTGATGACACCCTTTATCCTTTTAGTTCTGGTATGACAGTCCAGATCGGAGAAAAAGTTATAGAGTATGTGGTACAAAAGATTGGTATAGAAGATGTGGCTAAGGTCCGTGAATTGTGCCTTGCGTTATATAAGACTTATGGAACAGTATTGGCTGGTTTCAAGGCATTTGGACATGATTTTGACAATGAAGAGTTTAATAGTTTTGTACATGAGGCATTGCCATATGATGATGTACTGAAACCAGACCCTATTCTAAAGGACATTTTACAAAACCTGCCTCTCAGAAAGATTATTTTTACGAACGCAGACAATGCTCATGCCGTTAGAGTGCTTAAAAGGCTTGGACTAGAGGACTGCTTTGAGAGAATCATAGACTTTGACACTTTGAATTCCTCTAATAATAACATGGATCCTGCTCATGATTACCAACATGGCATTGATGCTGAATCAAAGCCAGTTAGCGCAAGAATATGTGAGATTTATGAGTATATGAAAAACCCTGATTCTTCTTATATAGACATGGTGCTTCCTAGGACCCCGGTTGTCTGCAAGCCCTTTGAATATGCATTTCAAAAGCTTTTCAAGATTGCTAATATTGACCCTCAAAGAACAGTAAGCACTCTAATCCACTAA 2853 0.4192 MIFSRIGRSLSRSSRAKDYLRGDAKLGTLLGATRTNVHSEGMELGLGFFRGYVAHARARGNGILSSLPDFKCVAANPKIHYRLFSSEGPKKKNYENFYPKEKKEIPKGEDKKHESKEESETNTDDHGSFQETFMKQVQNFITPLLVMGLFLGSFNFGPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRNTPRNQTESEVIQGTLPAKGTGGQYKYYFNIGSVESFEEKLEEAQEALGIDPHDYVPVTYSSEMVWYQELMRFAPTLLLLGSLFYMGRRMQGGLGVGGGGGNKGARGIFNIGKAHVTKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFQIYLKKIKLDHEPSFYSQRLAALTPGFAGADIANVCNEAALIAARGEETQVTMQHFEAAIDRIIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQILVGRISTGAQNDLEKVTKMTYAQVAIYGFSDKLSRSYAVISLIHFSFSVKSLLETQPTKVPMEENNGHDQFHEASKAKYDCLLFDLDDTLYPFSSGMTVQIGEKVIEYVVQKIGIEDVAKVRELCLALYKTYGTVLAGFKAFGHDFDNEEFNSFVHEALPYDDVLKPDPILKDILQNLPLRKIIFTNADNAHAVRVLKRLGLEDCFERIIDFDTLNSSNNNMDPAHDYQHGIDAESKPVSARICEIYEYMKNPDSSYIDMVLPRTPVVCKPFEYAFQKLFKIANIDPQRTVSTLIH 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00493 950 Gene3D - 149 260 - -
Aip03g00493 950 MobiDBLite consensus disorder prediction 95 125 - -
Aip03g00493 950 Pfam ATPase family associated with various cellular activities (AAA) 362 494 IPR003959 GO:0005524|GO:0016887
Aip03g00493 950 Gene3D - 496 571 - -
Aip03g00493 950 Gene3D - 305 494 IPR027417 -
Aip03g00493 950 SMART AAA_5 357 497 IPR003593 -
Aip03g00493 950 SUPERFAMILY FtsH protease domain-like 578 689 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip03g00493 950 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 734 945 IPR010237 -
Aip03g00493 950 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 12 910 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aip03g00493 950 PANTHER ATP-DEPENDENT PROTEASE 35 687 - -
Aip03g00493 950 ProSitePatterns AAA-protein family signature. 465 483 IPR003960 GO:0005524|GO:0016887
Aip03g00493 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 568 IPR027417 -
Aip03g00493 950 Pfam FtsH Extracellular 142 248 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Aip03g00493 950 Gene3D Peptidase M41 572 728 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip03g00493 950 CDD AAA 358 495 - -
Aip03g00493 950 SUPERFAMILY HAD-like 733 945 IPR036412 -
Aip03g00493 950 Gene3D - 816 946 IPR023214 -
Aip03g00493 950 Pfam Peptidase family M41 577 688 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip03g00493 950 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 35 687 - -
Aip03g00493 950 Pfam AAA+ lid domain 524 563 IPR041569 -
Aip03g00493 950 Gene3D - 729 815 - -
Aip03g00493 950 MobiDBLite consensus disorder prediction 95 127 - -
Aip03g00493 950 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 261 688 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00493 Aip-Chr3 4778126 4788907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00493 1 687 Miscellaneous Gene Families AT2G29080 76.835 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00493 K08956 - gmx:100806656 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00493 03 4778126 4788907 Aip03g00493 03 4778126 4788907 ECH
Aip08g00402 08 3087803 3090603 Aip03g00493 03 4778126 4788907 PCT