Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00260 ATGGCTTCTTCTGCTTCTGCTGGTGCCTCAGCTCGCGTGGATCTGGATGGGAACCCGATAAAGCCATTAACGATCTGCATGATCGGTGCCGGAGGGTTCATTGGCTCACACCTTTGCGAGAAGCTCATGTCCGAAACGCAGCACAAGGTTCTCGCATTGGATGTCTACAACGACAAGATCAAGCACCTCTTGGAGCCCGATAACCTTCCATGGCACGGTCGCATCACCTTCCACCGACTCAACATCAAGCACGATTCAAGGCTCGAAGGTCTCATCAAGATGTCGGATCTGACGATAAATCTGGCTGCAATTTGCACCCCTGCGGATTACAATACCCGTCCCCTTGACACAATTTACAGCAACTTCATCGATGCTCTCCCTGTGGTGAAGTACTGCTCTGAGAATAACAAGAGGCTTATTCACTTCTCTACTTGTGAAGTGTATGGGAAAACGATTGGAAGCTTTCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCATACTACGTTCTTAAAGAAGATGAGTCTCCATGCATTTTTGGTTCGATTGAGAAGCAGAGATGGTCCTATGCCTGTGCAAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGTATGGAGTTCACAATTGTGAGGCCTTTTAATTGGATTGGACCTAGAATGGATTTCATTCCTGGCGTTGATGGTCCTAGTGAGGGTGTTCCCCGGGTTCTTGCATGCTTTAGCAATAATCTTCTCAGAGGGCAGCCCCTCAAGCTAGTGGACGGTGGCCAATCCCAGAGAACCTTTGTTTACATCAAGGATGCTATTGAAGCTGTAACACTGATGATTGAAAACCCTGCCAGGGCTAATGGACATATCTTCAATGTGGGTAACCCCAACAATGAGGTTACAGTTCGGCAGCTTGCTGAAATGATGATTAAGGTATACTCAAAGGTAAGTGGAGAACAACCTCCAGAGACACCTACAATCGACGTCAGCTCGAAAGAATTTTATGGCGAGGGATATGACGATAGCGACAAGAGAATTCCTGACATGACCACAATAAACAGGCAGCTTGGTAGGTTTCCTCATTCATTCATTCATTCATTAATCGAATTTGATATTCAAGTTGTCAAGCTTCTTAACTTTTTTATGGTTTTGTTGTTCCTCTCACAGGATGGAACCCAAAGACCTCACTTTGGGACCTGCTTGAGTCCACACTGA 1218 0.4622 MASSASAGASARVDLDGNPIKPLTICMIGAGGFIGSHLCEKLMSETQHKVLALDVYNDKIKHLLEPDNLPWHGRITFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGMEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNNLLRGQPLKLVDGGQSQRTFVYIKDAIEAVTLMIENPARANGHIFNVGNPNNEVTVRQLAEMMIKVYSKVSGEQPPETPTIDVSSKEFYGEGYDDSDKRIPDMTTINRQLGRFPHSFIHSLIEFDIQVVKLLNFFMVLLFLSQDGTQRPHFGTCLSPH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00260 405 CDD Arna_like_SDR_e 24 362 IPR045869 GO:0016831
Aip03g00260 405 Pfam NAD dependent epimerase/dehydratase family 25 295 IPR001509 -
Aip03g00260 405 PANTHER - 11 371 - -
Aip03g00260 405 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 11 371 - -
Aip03g00260 405 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 362 IPR036291 -
Aip03g00260 405 Gene3D - 23 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00260 Aip-Chr3 2578045 2581245 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00260 K12449 - gmx:102667779 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00260 03 2578045 2581245 Aip03g00260 03 2578045 2581245 ECH
Aip08g00593 08 5235508 5238687 Aip03g00260 03 2578045 2581245 PCT