Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00254 ATGGGTGAGTTTGATTCGCAGCCGAAGTTCATTATCCCAGAGAGAATCCAGGGGGTGAGTTATGACATAGCAGGGCAGATAAAGATGATATGGGAAGTGATGAAAGCGCCATTGATAGTGCCAATGCTGAAGCTTGGAGTGTACATATGCCTTGCAATGTCGCTGATGCTGTTCATGGAGAGACTGTACATGGGAATCGTCATAATCTTGGTCAAGCTCTTCTGGAAGAAACCAGAGCAGCGTTACAAGTATGAACCCATCCAAGATGATCTTGAACTTGGAAGCTCCAATTTCCCTGTGGTTCTCATCCAGATTCCAATGTTCAATGAGAAAGAGGTATACAAGGTGTCAATTGGTGCAGCTTGTAATCTTTCATGGCCTGCTGATCGTCTTGTCATCCAAGTTCTTGATGATTCTACTGACCCTGCAATCAAGCAAATGGTGGAGATGGAATGCCAGAGATGGGGAAGTAAAGGCATAAACATAACATACCAAATAAGAGAGAACAGAACAGGATACAAAGCAGGTGCACTTAAAGAAGGTTTAAAGCGTAGCTATGTCAAACACTGTGAATACGTTGCAATATTCGATGCTGATTTCAGGCCTGAACCTGATTTCTTGAGAAGAGCCATTCCCTTCTTGATTGGCAATCCTGACATGGCTCTTGTTCAAGCTCGTTGGAGATTTGTGAATGCGGACGAGTGTTTGTTGACAAGAATGCAAGAGATGTCGTTGGATTACCATTTCACGGTGGAGCAAGAAGTTGGATCAGCAACACATGCTTTCTTTGGTTTCAATGGGACAGCGGGTGTATGGAGAATAGCAGCAATTAATGAGGCTGGTGGCTGGAAAGATAGGACCACTGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCTTAGGGGCTGGAAATTCTTGTACCTTGGTGACCTTCAGGCCAAAAGTGAGCTTCCAAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACCGTTGGTCTTGTGGTCCTGCTAATCTCTTCCGCAAAATGGTCATGGAGATAGTAAGAAACAAGAGAGTGAAGTTTTGGAAGAAAGTGTACGTGATATACAGCTTCTTCTTTGTACGTAAGATCATAGCTCACATGGTGACATTCTTCTTCTACTGTGTGGTGCTTCCCCTGACAATTCTGGTCCCTGAGGTTCGTGTTCCAATTTGGGGTGCTGTTTATATTCCTTCCATCATCACCATCCTCAATTCAGTAGGAACACCGAGGTCCATTCACTTGTTGTTCTATTGGATCCTTTTTGAGAATGTCATGTCTTTGCACCGAACCAAGGCTACATTTATTGGTTTGCTTGAAGCTGGCAGAGCCAATGAATGGGTTGTCACTGAAAAACTTGGAGATTCTGTCAACAACAACAAGAACAAAACAGCAGGAGATGCTGCTAAGAAGACTAATGCCAAATCCCCCAAAAGAACTAGATCCAAATTTGTCGAAAGACTTAATACATTGGAGCTGGGATTTGCAGCATTCCTCTTCATCTGTGGATGCTATGATTTTGTGCATGGCAAAAACAATTACTTCATATACCTCTTCCTTCAGACCATAACATTCTCCATTGTAGGATTTGGCTATGTTGGCACCATTGTGTAA 1632 0.4344 MGEFDSQPKFIIPERIQGVSYDIAGQIKMIWEVMKAPLIVPMLKLGVYICLAMSLMLFMERLYMGIVIILVKLFWKKPEQRYKYEPIQDDLELGSSNFPVVLIQIPMFNEKEVYKVSIGAACNLSWPADRLVIQVLDDSTDPAIKQMVEMECQRWGSKGINITYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRAIPFLIGNPDMALVQARWRFVNADECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKRVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVLPLTILVPEVRVPIWGAVYIPSIITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEAGRANEWVVTEKLGDSVNNNKNKTAGDAAKKTNAKSPKRTRSKFVERLNTLELGFAAFLFICGCYDFVHGKNNYFIYLFLQTITFSIVGFGYVGTIV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00254 543 Pfam Glycosyl transferase family group 2 192 388 IPR001173 -
Aip03g00254 543 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 318 IPR029044 -
Aip03g00254 543 PANTHER - 7 543 - -
Aip03g00254 543 PANTHER BNAC09G36340D PROTEIN 7 543 - -
Aip03g00254 543 SUPERFAMILY Nucleotide-diphospho-sugar transferases 96 380 IPR029044 -
Aip03g00254 543 CDD CESA_CaSu_A2 99 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00254 Aip-Chr3 2482662 2486559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00254 7 543 Miscellaneous Gene Families AT5G22740 82.189 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00254 K13680 - gmx:100802752 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00254 03 2482662 2486559 Aip03g00254 03 2482662 2486559 ECH
Aip08g00605 08 5365079 5370058 Aip03g00254 03 2482662 2486559 ECH