Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01245 ATGGTTGGTATTTTCTCATTGGTTACAGGGAGGCCTGGACCAAGTGGTTTTGGATCTGCATCAACTGCAGAACAAGTTACCGAAGGAATTGATGCTAGTAATCTTACTTGTATTATTACAGGAGGAGCGAGCGGTATAGGAATGGAGACGGCGCGAGTGCTAGCACTTCGAAAGGCCCACGTCATCATCGCAGCGAGGAACATGGAGTCCGCAAAGGAAGCAAAACAACTCATATTACAACAAAATGAGTCTGCTAGAGTGGAAATAATGAAACTTGACCTTACCTCTGTCAAATCTGTTAGATCTTTTGCAGAAAATTTCCTCGCTCGTGATCTTCCCCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTACCAGCGTTCAGAGGATGGGATTGAGATGCAGTTCGCAACAAACCATCTTGGGCATTTCCTCTTAACAAATCTTCTTCTTGAGAAAATGAAACAAAGCGCAAAAGCAAGTGGAATTGAAGGAAGGATTATAAATCTGTCATCAATTGCTCATACCTATACTTACGAAGAGGGGATTCGATTTGATAACCTTAACGATGAAGCTGGTTATTCTGACAAGAGGGCTTACGGGCAGTCCAAGCTAGCTAATATATTGCACGCAAATGAACTCTCTCGCCGTTTGAAGGAAGAAGGTGTGAACATCACAGCCAATTCAGTGCACCCCGGAGTGATAATGACTCCTCTTATGAGACATTCTACTCTACTCATGAATTTTCTGAAGATGTTCACATTTTTCATATGGAAAAGCGTTCCACAGGGAGCAGCCACAACATGCTACGTTGCTCTGCATCCAAGCGTGAAAGGTGTGAGTGGGAAGTACTTTCTGGATTGCAATGAGTTCCAACCAAGTGCATTTGCCTCAAACGAACTCTTAGGAAGAAAACTCTGGGACTTCAGCAACAAGTTGATCAACTCAATTTCCAAACCTTGA 972 0.4321 MVGIFSLVTGRPGPSGFGSASTAEQVTEGIDASNLTCIITGGASGIGMETARVLALRKAHVIIAARNMESAKEAKQLILQQNESARVEIMKLDLTSVKSVRSFAENFLARDLPLNILINNAGVMFCPYQRSEDGIEMQFATNHLGHFLLTNLLLEKMKQSAKASGIEGRIINLSSIAHTYTYEEGIRFDNLNDEAGYSDKRAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSTLLMNFLKMFTFFIWKSVPQGAATTCYVALHPSVKGVSGKYFLDCNEFQPSAFASNELLGRKLWDFSNKLINSISKP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01245 323 CDD retinol-DH_like_SDR_c_like 38 310 - -
Aip02g01245 323 Pfam short chain dehydrogenase 37 183 IPR002347 -
Aip02g01245 323 Gene3D - 26 320 - -
Aip02g01245 323 Coils Coil 68 88 - -
Aip02g01245 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Aip02g01245 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Aip02g01245 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Aip02g01245 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Aip02g01245 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Aip02g01245 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Aip02g01245 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Aip02g01245 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Aip02g01245 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Aip02g01245 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01245 Aip-Chr2 26916821 26927215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01245 35 242 Miscellaneous Gene Families AT2G29340 28.436 4.09e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01245 K11153 - gmx:100807056 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01537 06 27242272 27249645 Aip02g01245 02 26916821 26927215 PCT