Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02165 ATGCAAACACCTAATATTATAACATCATCACTCCATTCTTCATCTGATTACTCCAACCACCATAACCAAACCTCTTTATCCTCAGAACCCAGCTTGGCTTCAGTACCTTCTCTTAACAAGAATTACCATTATTCTTGTTCTAATTATTCAATGGCCTCATACAACTGCATCGCAACCCTAAAAGGACACAACTACTACACATCCTCCGTAACCGTCTCCGCTAAATTCCTCTATAGTGGCTCCTCCGATAGAGAAATTAGGTCATGGTCCAAACAATCATTATTAACTACCAATAATAATATAGTCCTTGCTGGGAAAGGTGCAGTCAAGGCTCTAATTATTCACTCCAACAAGCTCTTTATTGCTCACCAAGATAACAAAATTAGGGTTTGGAAGATCACCAACAATATCAACAACCACCACGACCATGAGCAGAAGACGATCAAGATTTGGCGAACCAGAGATTTTGCGTGTTTGGAATCAGTGATGAATGCATACGATGATGCCATCAACGCAGTCGCAGTTTCCAACGATGGACGCGTCTACACAGGATCGGCGGACAAAAGAATCAAGGTTTGGAAGAAAAAGAAAGGCGGCGGCCAAGGAGTAGTGGGAGAGAAAAGCAAAAGCAAAAACAAACACTACCTTGTGGACACGTTGGAGAATCACAAGTCTGGGATCAACGCTTTGGCGCTTAACGGCGACGGTTCGTTACTATATTCCGGGGCATGTGATAGATCAATACTGTTGTGGGCGAAGAAGGAAGAAGACAAAGAAAGAGAAGGTGGTGATGGAAAAATGGTGGTGGTGGGTGCGATTAGGGCGCATGGTAGGTCTATACTTTGCTTGGTGGTGGTGATGGATTTTGTTGTGAGTGGTTCAGAGGACAAAACGATTCGTGTTTGGAGGGGTTTTGGCGGGAGAAAGTATAGTTGTGTGGCGGTTTTGGAAGGGCATAGAGGACCAACCGCCATGGTTGATCATAACCATGATGATACCTCCCAAGCATCCGTGGTAGTCTACAGTGGCAGTTTGGACTCTGACATTAAGGTTTGGAAGGTTTTTGTTCCTCTTCTCTAA 1080 0.4407 MQTPNIITSSLHSSSDYSNHHNQTSLSSEPSLASVPSLNKNYHYSCSNYSMASYNCIATLKGHNYYTSSVTVSAKFLYSGSSDREIRSWSKQSLLTTNNNIVLAGKGAVKALIIHSNKLFIAHQDNKIRVWKITNNINNHHDHEQKTIKIWRTRDFACLESVMNAYDDAINAVAVSNDGRVYTGSADKRIKVWKKKKGGGQGVVGEKSKSKNKHYLVDTLENHKSGINALALNGDGSLLYSGACDRSILLWAKKEEDKEREGGDGKMVVVGAIRAHGRSILCLVVVMDFVVSGSEDKTIRVWRGFGGRKYSCVAVLEGHRGPTAMVDHNHDDTSQASVVVYSGSLDSDIKVWKVFVPLL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02165 359 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 251 - -
Aip01g02165 359 SMART WD40_4 213 252 IPR001680 GO:0005515
Aip01g02165 359 SMART WD40_4 156 194 IPR001680 GO:0005515
Aip01g02165 359 SMART WD40_4 53 90 IPR001680 GO:0005515
Aip01g02165 359 SMART WD40_4 266 303 IPR001680 GO:0005515
Aip01g02165 359 SMART WD40_4 96 132 IPR001680 GO:0005515
Aip01g02165 359 SMART WD40_4 309 353 IPR001680 GO:0005515
Aip01g02165 359 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 146 357 - -
Aip01g02165 359 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 12 140 - -
Aip01g02165 359 Gene3D - 8 144 IPR015943 GO:0005515
Aip01g02165 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 194 IPR001680 GO:0005515
Aip01g02165 359 MobiDBLite consensus disorder prediction 1 33 - -
Aip01g02165 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 90 IPR001680 GO:0005515
Aip01g02165 359 SUPERFAMILY WD40 repeat-like 53 353 IPR036322 GO:0005515
Aip01g02165 359 Gene3D - 145 356 IPR015943 GO:0005515
Aip01g02165 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 302 IPR001680 GO:0005515
Aip01g02165 359 Pfam WD domain, G-beta repeat 169 194 IPR001680 GO:0005515
Aip01g02165 359 Pfam WD domain, G-beta repeat 217 251 IPR001680 GO:0005515
Aip01g02165 359 Pfam WD domain, G-beta repeat 273 302 IPR001680 GO:0005515
Aip01g02165 359 Pfam WD domain, G-beta repeat 55 90 IPR001680 GO:0005515
Aip01g02165 359 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 146 357 IPR045182 -
Aip01g02165 359 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 140 IPR045182 -
Aip01g02165 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 251 IPR001680 GO:0005515
Aip01g02165 359 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Aip01g02165 359 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Aip01g02165 359 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02165 Aip-Chr1 115269496 115270727 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02165 - - ahf:112722395 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01968 01 105028939 105030656 Aip01g02165 01 115269496 115270727 PCT