Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01968 ATGAAGGCGAGAAGTTCTTCATCTGATTACTCCAACCACCATAACCAAACCTCTTTATCCTCACAACCCAGCTTGGCTTCAGTACCTTCTCTTAACAAGAACTACCATTATTCTTGTTCTAATTATTCAACCGCCTCATACAACTGCATCGCAACCCTAAAAGGACACAACTACTACCCATCCTCCTTAACCCTCTCCGCTAAATTCCTCTACAGTGGCTCCTCCGATAGAGAAATTAGGTCATGGTCCAAACAATCATTATTAACTACCACTAATAATATAGTCCTTGCTGGGAAAGGTGCAGTCAAGTCTCTAGTTGTTCACTCCGACAAGCTCTTTAGTGCTCACCAAGATAACAAAATTAGGGTTTGGAAGATCACCAACAATATCAACAACCACCACGACCATGAGCTTCAGTACACGCGTTTGGCCACGCTTCCAACGCTCAGCGACCGCGTCTCGAAGATACTACTCCCCAAAAACCACGTTAGAATCCGGAGGCACAAAAGGTCCACGTGGGTTCACCACGTAGACGCAGTGTCTTGTCTCGCCCTGTCCCATGACGGAGCCTTGCTATACTCTGTCTCATGGGACAGGACGATCAAGATTTGGCGAACCAGAGACTTTGCGTGTTTGGAATCAGTGATGAATGCACACGATGATGCCATCAACGCAGTCGCAGTTTCCAACGATGGACGAGTCTACACAGGATCGGCGGACAAAAGAATCAAGGTTTGGAAGAAGAAGAAAGGCGACGGCCAAGGAGTAGTGGGAGAGAAAAGCAAAAGCAAAAACAAACACTACCTTGTGGACACGTTGGAGAAACACAAGTCTGGGATCAACGCTTTGGCGCTTAACGGCGACGGTTCGTTACTATATTCCGGGGCATGTGATAGATCAATACTGTTATGGGCGAGGAAGGAAGAAGACAAAGAAGAAGAAGGTGGTGATGGAAAAATGGTGGTGGTGGGTGCGTTAAGGGGGCATGGTAGGTCTATACTTTGCTTGGTGGTGGTGATGGATTTTGTTGTGAGTGGTTCAGAGGACAAAACGATTCGTGTTTGGAGGGGTTTTGGCGGGAGAGAGTATAGTTGTGTGGCGGTTTTGGAAGGACATAGAGGACCAATTAAGAGCCTCACCGCCATGGTTGATCATAACCATGATGATCCTTCCCAAGCATCGATGGTTGTCTATAGTGGCAGTTTAGACTGTGACATTAAGGTTTGGAAGGTTTTTGTTCCTCTTCTCTGA 1251 0.4668 MKARSSSSDYSNHHNQTSLSSQPSLASVPSLNKNYHYSCSNYSTASYNCIATLKGHNYYPSSLTLSAKFLYSGSSDREIRSWSKQSLLTTTNNIVLAGKGAVKSLVVHSDKLFSAHQDNKIRVWKITNNINNHHDHELQYTRLATLPTLSDRVSKILLPKNHVRIRRHKRSTWVHHVDAVSCLALSHDGALLYSVSWDRTIKIWRTRDFACLESVMNAHDDAINAVAVSNDGRVYTGSADKRIKVWKKKKGDGQGVVGEKSKSKNKHYLVDTLEKHKSGINALALNGDGSLLYSGACDRSILLWARKEEDKEEEGGDGKMVVVGALRGHGRSILCLVVVMDFVVSGSEDKTIRVWRGFGGREYSCVAVLEGHRGPIKSLTAMVDHNHDDPSQASMVVYSGSLDCDIKVWKVFVPLL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 247 IPR001680 GO:0005515
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 247 - -
Aip01g01968 416 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 414 IPR045182 -
Aip01g01968 416 SMART WD40_4 362 410 IPR001680 GO:0005515
Aip01g01968 416 SMART WD40_4 266 305 IPR001680 GO:0005515
Aip01g01968 416 SMART WD40_4 46 83 IPR001680 GO:0005515
Aip01g01968 416 SMART WD40_4 166 205 IPR001680 GO:0005515
Aip01g01968 416 SMART WD40_4 89 125 IPR001680 GO:0005515
Aip01g01968 416 SMART WD40_4 209 247 IPR001680 GO:0005515
Aip01g01968 416 SMART WD40_4 319 356 IPR001680 GO:0005515
Aip01g01968 416 MobiDBLite consensus disorder prediction 1 25 - -
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 355 IPR001680 GO:0005515
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 304 IPR001680 GO:0005515
Aip01g01968 416 Gene3D - 161 413 IPR015943 GO:0005515
Aip01g01968 416 CDD WD40 49 410 - -
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 304 - -
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 355 - -
Aip01g01968 416 Gene3D - 6 160 IPR015943 GO:0005515
Aip01g01968 416 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Aip01g01968 416 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Aip01g01968 416 PRINTS G protein beta WD-40 repeat signature 112 126 IPR020472 -
Aip01g01968 416 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Aip01g01968 416 Pfam WD domain, G-beta repeat 48 83 IPR001680 GO:0005515
Aip01g01968 416 Pfam WD domain, G-beta repeat 216 247 IPR001680 GO:0005515
Aip01g01968 416 Pfam WD domain, G-beta repeat 270 304 IPR001680 GO:0005515
Aip01g01968 416 Pfam WD domain, G-beta repeat 364 410 IPR001680 GO:0005515
Aip01g01968 416 Pfam WD domain, G-beta repeat 324 355 IPR001680 GO:0005515
Aip01g01968 416 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 4 414 - -
Aip01g01968 416 SUPERFAMILY WD40 repeat-like 42 411 IPR036322 GO:0005515
Aip01g01968 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01968 Aip-Chr1 105028939 105030656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01968 212 410 Acyl Lipid Metabolism Gene Families AT3G18860 24.390 8.58e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01968 - - aip:107610034 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01968 01 105028939 105030656 Aip01g01968 01 105028939 105030656 ECH
Aip01g01968 01 105028939 105030656 Aip01g02165 01 115269496 115270727 PCT