Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01658 ATGGAAGGAGGAGTAGTGTTTGGTGGAGGCAGAGCTGTTGCTGCCTCTTGTGTCTCTTCCTCTCTTCTCCGACCAACCACCACCAAGTTCACCGTTTCAGCCTCCACACGCCGACACCAACACCAACACCTCACTGCATTCCCTTCTCATTCCCATCTTTTCTCTTCTTCTTCTCCGTATGCCAAATCCCTTCGCGCCAGAACCGCTTCCAACCCCGGCATCTTCCTCCCACACCTAATTGCTTCTCTGGAACAGGTTGACCAAACTTACATAATGGTCAAACCTGACGGCGTTCAACGTGGCCTTGTAGGAGAAATTATTTCTAGGTTTGAGAAGAAAGGGTTTAAGTTAACTGGCTTGAAGCTCTTCCAATGCTCAAAGGAATTAGCTGAGGAGCATTACAAGGACCTAAAAGGAAAGTCATTCTTCCCTAAGCTGATTGACTATATTACTTCAGGTCCTGTTGTGTGCATGGCTTGGGAGGGTGTTGGAATAGTGGCATCAGCACGTAAACTTATTGGAGCTACAGATCCTCTACAAGCTGAACCAGGCACAATAAGAGGAGATCTCGCAGTTCAAACAGGAAGGAACATTGTTCATGGCAGTGACAGCCCTGAGAATGGAAAGCGGGAAATAGCTCTATGGTTCAACGAAGCCGAATTATGCCAATGGAATCCTGCCCAAGCGCCATGGCTAAGAGAATAA 705 0.4766 MEGGVVFGGGRAVAASCVSSSLLRPTTTKFTVSASTRRHQHQHLTAFPSHSHLFSSSSPYAKSLRARTASNPGIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKGKSFFPKLIDYITSGPVVCMAWEGVGIVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIALWFNEAELCQWNPAQAPWLRE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01658 234 Pfam Nucleoside diphosphate kinase 88 220 IPR034907 -
Aip01g01658 234 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 30 233 - -
Aip01g01658 234 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 30 233 - -
Aip01g01658 234 SMART ndk_5 86 223 IPR034907 -
Aip01g01658 234 Gene3D - 82 234 IPR036850 -
Aip01g01658 234 ProSitePatterns Nucleoside diphosphate kinases active site. 197 205 IPR023005 -
Aip01g01658 234 CDD NDPk_I 88 216 - -
Aip01g01658 234 Hamap Nucleoside diphosphate kinase [ndk]. 86 221 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aip01g01658 234 SUPERFAMILY Nucleoside diphosphate kinase, NDK 87 232 IPR036850 -
Aip01g01658 234 PRINTS Nucleoside diphosphate kinase signature 89 111 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aip01g01658 234 PRINTS Nucleoside diphosphate kinase signature 133 152 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aip01g01658 234 PRINTS Nucleoside diphosphate kinase signature 153 170 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aip01g01658 234 PRINTS Nucleoside diphosphate kinase signature 174 190 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aip01g01658 234 PRINTS Nucleoside diphosphate kinase signature 197 216 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01658 Aip-Chr1 63190341 63194024 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01658 K00940 - gmx:100500478 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01658 01 63190341 63194024 Aip01g01658 01 63190341 63194024 ECH
Aip01g01658 01 63190341 63194024 Aip05g01459 05 23147739 23151862 PCT