Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01274 ATGGATTCATACCCTGTTATTGGATTTAACAGAAACAACGGGCAAGAAGGACAGCAGGCAGCAGGACTAGTCCTTGATCAACCAATCTTATACAACAACAATCATGGAAGTGCTAATTCTCGAAAGAGAACAAGAGAGGCCACAGTTCACAGCAACAGCAATGTTGTCATGAACAATAATAATAATAATAATCCATTGATACCTTTCGAATCCCAACCTCCACAACTCATACACCTTTCTCAGCTGCACAATAATGTGGTCTCAACAGGCCTACGCTTATCCAACTCTACCATCGACCAACAACAACTTCTTCATGGATCTCAATCTTCATCTTCTTCTTCTTCTCTCTTATCTCTGTTCTCACAAGGATTTGCTTCCCAAATCAAACAACAAAGGGACGAAATTGAACAATTCCTCCAAGCTCAGACCATGATGGCCTCTGCTGGCGCCGCCACACACGGCGGAGATGACGGTGGCGCCGGATTGTCATGCGCAGTTGAGGGACAGGCGGAGGACGCAGAATCAGCGTATGTGGACCCGGACAGGGTGGTGATGGTTTCGGCAGCGGCGGCGCGTCCAAAGTGCCGGGGATGCGGGCGGCGCGTGGCTTCAGTTGTGGTTCTGCCGTGTCGGCACTTATGCATCTGTACGGAATGCGAGGCGCACTTCCGCGCGTGCCCCGTTTGCCTTACACTCAAGAATTCAACCGTTGAGGTCTTTCTCTGA 726 0.4959 MDSYPVIGFNRNNGQEGQQAAGLVLDQPILYNNNHGSANSRKRTREATVHSNSNVVMNNNNNNNPLIPFESQPPQLIHLSQLHNNVVSTGLRLSNSTIDQQQLLHGSQSSSSSSSLLSLFSQGFASQIKQQRDEIEQFLQAQTMMASAGAATHGGDDGGAGLSCAVEGQAEDAESAYVDPDRVVMVSAAAARPKCRGCGRRVASVVVLPCRHLCICTECEAHFRACPVCLTLKNSTVEVFL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01274 241 PIRSF SBP1_RNase_bind 5 146 IPR017066 -
Aip01g01274 241 PIRSF SBP1_RNase_bind 141 241 IPR017066 -
Aip01g01274 241 Pfam Zinc finger, C3HC4 type (RING finger) 194 230 - -
Aip01g01274 241 ProSiteProfiles Zinc finger RING-type profile. 195 229 IPR001841 -
Aip01g01274 241 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 164 241 - -
Aip01g01274 241 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 16 143 - -
Aip01g01274 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 241 IPR013083 -
Aip01g01274 241 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 16 143 IPR017066 -
Aip01g01274 241 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 164 241 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01274 Aip-Chr1 35831093 35832555 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01274 K19042 - gmx:100788924 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01274 01 35831093 35832555 Aip01g01274 01 35831093 35832555 ECH
Aip05g00458 05 5131347 5135631 Aip01g01274 01 35831093 35832555 PCT