Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01005 ATGTGCTTGCGTTGGCGGTTGCAAGGGTCGGTTGCCAAGTCGTGCACGCCCCATCAAAACAGTTCGTCCACGACCATGACTGCCCTATGGAGCTTGAAGGTGTCCCCTCAGGTTGATCCCGAGATTCAATCACTCTCAGAGGGACCCACTTTGCCAACAAGAAACAACGATGAGTTCCGTCCCTTCGTTCGTCGCCTCCCAGAGTTCAAGTTCTGGTACTCAATAACAAAGGCTTTTTGCATTGCGTTTGTGATGACATTTTTTAGTGCATTTGATGTTCCAGTGTTCTGGCCAATACTCCTATTCTATTGGGTGGTCCTATTTACACTTACTATGAGGAGACAGATATCACACATGATCAAATACAAATATGTACCGTTCACATTAGGCAAACAGCGCTATAATGGGAAGAGAGCATCAGCAGAAAGCGCAAGCCTTTCGGAGGACTGA 450 0.4711 MCLRWRLQGSVAKSCTPHQNSSSTTMTALWSLKVSPQVDPEIQSLSEGPTLPTRNNDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFTLGKQRYNGKRASAESASLSED 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01005 149 PANTHER PROTEIN RER1 34 143 - -
Aip01g01005 149 PANTHER PROTEIN RER1 34 143 IPR004932 GO:0016021
Aip01g01005 149 Pfam Rer1 family 34 135 IPR004932 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01005 Aip-Chr1 20451229 20453174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01005 34 145 Miscellaneous Gene Families AT4G39220 72.321 7.21e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01005 - - ahf:112799570 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01005 01 20451229 20453174 Aip01g01005 01 20451229 20453174 ECH
Aip05g00608 05 7471067 7472933 Aip01g01005 01 20451229 20453174 PCT