Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00519 ATGCATCAGGGATATCCAACTGAAACACTAGCCAGATTTCTCAAAGCAAGGGACTGGAATGTTGCCAAAGCCCATAAAATGATAATCGATTGTTTACAATGGAGAGTTGAAAATGAGATTGACAATGTTTTATCAAAGCCAATCCCCGTAGATGTGTACAAAGCCGTGCGAGATTCTCAACTCATTGGAATGTCTGGTTACTCAAAGGAGGGCCTTCCTGTCATCGCTGTTGGTGTTGGGCTCAGCACATTTGACAAAGCATCCGACAAATACTATGTGCAATCGCACATCCAAATGAACGAATATAGGGATCGGGTGGTCTTGCCAACAGCTTCGAAGAAGCAAGGACGTTACATTGGCACTTGTGTGAAAGTCTTGGATATGACTGGTTTGAAAATTTCAGCGCTGAACCAACTGAGGCTTTTGACTGCTATATCTACAATTGACGACTTGAACTACCCGGAAAAGACAGACACATATTATATTGTTAACGTGCCGTATGTATTCTCGGCGTGTTGGAAGGTTGTAAAGCCCCTTTTGCAAGAAAGAACGAGGAAGAAAGTTCAGGTGCTGCAAGGATGTGGGAAGGAGGAATTACTCAAGGTAATGGACTATCAGTCTCTCCCACACTTCTGCAGAAAAGAAGGTTCCGGATCCTCGAAACACCGCGTAGCAGGAGACACTGAAAATTGCTTCTCCTTCGACAGCAACTTCCACCAACATCTCTACAACTTCATCAAGCAGCAAGCCGTCGTCATGCAAACCATATCACCAATCAGACAGGGATCCTTCTATGTTGACTTACCCGAGCCAGACCCCGACGACGCCAAGATTGCCAAGACCATCGAATCCGAGCTCCACAAGTTGGAAATTCAGAATGGTTCAATGAATGGTGTT 897 0.4493 MHQGYPTETLARFLKARDWNVAKAHKMIIDCLQWRVENEIDNVLSKPIPVDVYKAVRDSQLIGMSGYSKEGLPVIAVGVGLSTFDKASDKYYVQSHIQMNEYRDRVVLPTASKKQGRYIGTCVKVLDMTGLKISALNQLRLLTAISTIDDLNYPEKTDTYYIVNVPYVFSACWKVVKPLLQERTRKKVQVLQGCGKEELLKVMDYQSLPHFCRKEGSGSSKHRVAGDTENCFSFDSNFHQHLYNFIKQQAVVMQTISPIRQGSFYVDLPEPDPDDAKIAKTIESELHKLEIQNGSMNGV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00519 299 SMART sec14_4 49 217 IPR001251 -
Aip01g00519 299 SMART CRAL_TRIO_N_2 6 31 IPR011074 -
Aip01g00519 299 PANTHER - 1 297 - -
Aip01g00519 299 Pfam CRAL/TRIO domain 60 211 IPR001251 -
Aip01g00519 299 Pfam CRAL/TRIO, N-terminal domain 5 30 IPR011074 -
Aip01g00519 299 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 49 209 IPR001251 -
Aip01g00519 299 SUPERFAMILY CRAL/TRIO N-terminal domain 4 45 IPR036273 -
Aip01g00519 299 CDD SEC14 53 211 IPR001251 -
Aip01g00519 299 PANTHER OS09G0258000 PROTEIN 1 297 - -
Aip01g00519 299 SUPERFAMILY CRAL/TRIO domain 52 211 IPR036865 -
Aip01g00519 299 Gene3D - 2 229 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00519 Aip-Chr1 7379232 7382120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00519 1 289 Acyl Lipid Metabolism Gene Families AT1G55840 70.345 1.93e-163 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00519 - - gmx:100817955 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00519 01 7379232 7382120 Aip01g00519 01 7379232 7382120 ECH
Aip01g00519 01 7379232 7382120 Aip07g00152 07 1181199 1184336 PCT