Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00392 ATGTGGAATTTGGAAAATTCATTCAACAACCATCTTAGCTTTATACGCATCTCATATGCTAAAAACCCTCCCCATTCACCACCACATAACCCTCATTCTCTAACATTTTCTCTCCCACACACTAACTTGAAGGAGAGAAAGAAAGAATTGGAAGAACCAAACATGGTTGCCTTGGAACAAGTAGAACATCATCATCATCATGAAAAAACACATGTTCATGTTGTTAATAATGACAATAATGGTTCTTGTGATGATGATTTTGATCCAAGTGCACCTCCACCCTTCAAGATTGCAGAGATAAGAAGAGCAATTCCAAAGCATTGTTGGAAGAAGGACACGTGGCGGTCATTAAGATATGTCCTTAGAGATGTTCTTATAGTCACTGCATTTATGGCTCTTGCAATTGCTTTCAGTAGCTGGTTCTTCTGGCCATTCTATTGGCTTGCTCAGGGTACAATGTTCTGGGCTCTTTTTGTTCTTGGACATGATTGGAAAAGCATTGTGGGCCATATCTTACACTCATTCATCCTTGTACCATACCATGGATGGAGAATTAGTCATAGAACTCACCATCAAAACCATGGACACGTTGAGCATGATGAATCATGGGTTCCTCTGACAGAGAAGATTTACAAGAATCTAGATAACACAACAAGAATCCTAAGATTCACATTGCCTTTTCCAATCTTTGCATACCCCTTTTATTTGTGGAAAAGAAGCCCTGGAAAAGAAGGGTCTCACTTTAATCCCTACAGCAAATTGTTCTCCCCTGATGAGAGAAAAGATGTATTAACATCAACTCTCTGTTGGATTGCCATGTTCTCTTTGCTTATTTATTTGTCCTTCGCAATGGGTCCAATTTTGATTCTCAAGCTCTATGGAGTCCCTTATTCGATCTTCGTAATGTGGTTGGACTTCGTCACATATTTGCATCACCATGGTTACAAGCAGAAATTACCATGGTACCGTGGCAAGGAATGGGATTACCTAAGGGGTGGTCTTACAACTGTGGATCGAGACTATGGTTGGGTTAATAAAATTCACCATGACATTGGCACCCATGTCATCCATCATCTTTTCCCTCAAATTCCCCATTACCATTTAGTTGAAGCGACAGAATCAGCAAAGGGAGTTCTTGGAGAATATTATAGGGAGCCAGAGAAATCAGGTCCAATCCCATTGCATCTAATAAAGTATTTGCTGCACAGTGTAAAGCATGATCACTTCGTCAGTGACTTTGGGGACATTGTGTTCTACCAAACAGACCCTCAACATTCTTCGGACAAGTCTAAATGA 1296 0.4028 MWNLENSFNNHLSFIRISYAKNPPHSPPHNPHSLTFSLPHTNLKERKKELEEPNMVALEQVEHHHHHEKTHVHVVNNDNNGSCDDDFDPSAPPPFKIAEIRRAIPKHCWKKDTWRSLRYVLRDVLIVTAFMALAIAFSSWFFWPFYWLAQGTMFWALFVLGHDWKSIVGHILHSFILVPYHGWRISHRTHHQNHGHVEHDESWVPLTEKIYKNLDNTTRILRFTLPFPIFAYPFYLWKRSPGKEGSHFNPYSKLFSPDERKDVLTSTLCWIAMFSLLIYLSFAMGPILILKLYGVPYSIFVMWLDFVTYLHHHGYKQKLPWYRGKEWDYLRGGLTTVDRDYGWVNKIHHDIGTHVIHHLFPQIPHYHLVEATESAKGVLGEYYREPEKSGPIPLHLIKYLLHSVKHDHFVSDFGDIVFYQTDPQHSSDKSK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00392 431 Pfam Domain of unknown function (DUF3474) 54 130 IPR021863 GO:0016717
Aip01g00392 431 PANTHER TEMPERATURE-SENSITIVE SN-2 ACYL-LIPID OMEGA-3 DESATURASE (FERREDOXIN), CHLOROPLASTIC 47 427 - -
Aip01g00392 431 Pfam Fatty acid desaturase 166 383 IPR005804 GO:0006629
Aip01g00392 431 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 47 427 - -
Aip01g00392 431 CDD Delta12-FADS-like 111 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00392 Aip-Chr1 4796123 4799658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00392 87 424 Lipid Metabolism Gene Families AT3G11170 70.201 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00392 K10257 - gmx:547470 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00392 01 4796123 4799658 Aip01g00392 01 4796123 4799658 ECH
Aip01g00392 01 4796123 4799658 Aip07g01486 07 25840380 25843512 ECH
Aip01g00392 01 4796123 4799658 Aip07g01486 07 25840380 25843512 PCT