Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy9g2089 | ATGGGCAACTCTTTTGGCTGCTCCGCCTCCGGCGAGAGGCTTGTCTCCGCCGCCAGGGACGGCGACCTTGTTGAGGCCAAGATGCTTCTCAACTGCAACCCTTGTCTTGCCAAGTACTCCACTTTTGGTGGCCTCAATTCCCCTCTCCATTTTGCTGCTGCCAAGGGCCACAACGAGATTGTGGCATTGTTGCTTGAGAATGGTGCTGATGTGAATTCAAGGAATTATTGTGGCCAGACGGCTTTGATGCAAGCTTGTAGATATGGCCATTGGGAAGTTGTACAGACGCTTCTGCTCTTCAGATGCAATGTTATGAGAGCAGATTATCTCAGTGGGAGAACTGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGATGTATTAGACTTGTTGTGGCCGACTTTGTTCCAAGTGCTCCATATGAGGCTGTACAGGCTCGCACACAGGTCGACAAGGGCGATGCATCAAATGTGAAAGGAAAACATGAGCAAAGTGCCCTGTCCAAGTTTGTGAATAAGACAGCTGATGGTGGTATTACTGCCCTTCATATGGCTGCATTGAATGGATATTTTGATTGTGTACAATTGCTACTTGATCTTAACGCAAATGTATCTGCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACACCATTGCATTATGCTGCTTGTGGGGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCTAGCCGGATGGCTTTGAATTGCAATGGATGGCTTCCTCTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTTGAGCCTTTGATGTCACCCAGTTCTGATGCCACAATACCTACATTTCGTCATTCAAATTACTTGTCCTTGCCTCTTATGAGTGTGCTTAACATAGCCAGAGAGTATGGGTTGCAATCATCTACAACCACCTCAGATGAGATTGACTTCTGTGCCGTCTGCCTAGAGAGGCCATGTTCAGTTGCTGCAGAAGGATGTGGGCATGAGCTATGTGTAAGATGTGCACTCTATCTCTGCTCAACAATGAATGTTTCTTCTGAATCGCTCGGCCCTCCGGGCTCTATCCCTTGCCCACTCTGTAGACATGGAGTTGTCTCTTTTGTTAAGTTACCAGGTTCCGTAGCAAAAGAGAATAAACTACACGTGTCTCTTGGCTTGTGTACCCCATGCATGCTACATCCACGTGACCTGGATCAACCATCTCTTTCAGATACTCCAGAGATTCGAAGAAACTGTGTAGCTTCTGTTCCTTCAGAGATACTATGCCCTGTCACTTGTGGTCCATTTCCATCCATGACAATTCCTCTATGTACCTGCAATGATGGTCCATGTCCAACATTTGAACCCCGAGAAGCAGAAACACAGGATGGATCACCCCGTCACTCACATGCTTCTACGACAGACCAGGATAAAATGGAAGGGCCTAGACTTGATAAAACAACGTGTTCGAGCATGTTTTGGGGCAGGAGAAGTTGCAGCCGGGAGCACCAGTGCAATTCAGAAATAAATGCTTGA | 1539 | 0.4698 | MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPYEAVQARTQVDKGDASNVKGKHEQSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLMSPSSDATIPTFRHSNYLSLPLMSVLNIAREYGLQSSTTTSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTMNVSSESLGPPGSIPCPLCRHGVVSFVKLPGSVAKENKLHVSLGLCTPCMLHPRDLDQPSLSDTPEIRRNCVASVPSEILCPVTCGPFPSMTIPLCTCNDGPCPTFEPREAETQDGSPRHSHASTTDQDKMEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA* | 513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy9g2089 | 512 | SMART | ANK_2a | 177 | 206 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | SMART | ANK_2a | 220 | 249 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | SMART | ANK_2a | 77 | 106 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | SMART | ANK_2a | 111 | 141 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 391 | IPR013083 | - | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 177 | 209 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 111 | 132 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | PANTHER | HOMEOBOX PROTEIN WARIAI | 1 | 512 | - | - | |
| Ahy9g2089 | 512 | Gene3D | - | 143 | 270 | IPR036770 | - | |
| Ahy9g2089 | 512 | Gene3D | - | 6 | 142 | IPR036770 | - | |
| Ahy9g2089 | 512 | ProSitePatterns | Zinc finger RING-type signature. | 334 | 343 | IPR017907 | - | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 220 | 252 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 44 | 75 | - | - | |
| Ahy9g2089 | 512 | Pfam | Ankyrin repeats (many copies) | 220 | 261 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | Pfam | Ankyrin repeats (many copies) | 171 | 217 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XBOS32 | 1 | 512 | - | - | |
| Ahy9g2089 | 512 | MobiDBLite | consensus disorder prediction | 458 | 485 | - | - | |
| Ahy9g2089 | 512 | PRINTS | Ankyrin repeat signature | 112 | 127 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | PRINTS | Ankyrin repeat signature | 193 | 207 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | SUPERFAMILY | RING/U-box | 315 | 375 | - | - | |
| Ahy9g2089 | 512 | Pfam | Ankyrin repeat | 112 | 130 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | ProSiteProfiles | Zinc finger RING-type profile. | 319 | 369 | IPR001841 | - | |
| Ahy9g2089 | 512 | SUPERFAMILY | Ankyrin repeat | 14 | 268 | IPR036770 | - | |
| Ahy9g2089 | 512 | MobiDBLite | consensus disorder prediction | 461 | 485 | - | - | |
| Ahy9g2089 | 512 | Pfam | Ankyrin repeats (many copies) | 46 | 98 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 44 | 76 | IPR002110 | GO:0005515 | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 220 | 246 | - | - | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 111 | 132 | - | - | |
| Ahy9g2089 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 177 | 206 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy9g2089 | Ahy-Chr9 | 109556121 | 109560605 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy9g2089 | 14 | 280 | Miscellaneous Gene Families | AT2G31820 | 28.044 | 1.98e-13 | 70.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy9g2089 | K19044 | - | gmx:100785638 | 987.638 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Ahy19g3536 | 19 | 158129069 | 158133531 | Ahy9g2089 | 9 | 109556121 | 109560605 | hybridization | |
| Ahy15g3500 | 15 | 157742409 | 157746527 | Ahy9g2089 | 9 | 109556121 | 109560605 | PCT | |
| Ahy5g3090 | 5 | 112570403 | 112574507 | Ahy9g2089 | 9 | 109556121 | 109560605 | PCT | |
| Ahy9g2089 | 9 | 109556121 | 109560605 | Ahy15g3500 | 15 | 157742409 | 157746527 | PCT | |
| Ahy9g2089 | 9 | 109556121 | 109560605 | Ahy5g3090 | 5 | 112570403 | 112574507 | PCT |