Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3500 ATGGGGAATTCATTTGGGTGCTCAGCCTCTGGGGAGAGGCTGGTGTCGGCGGCAAGGGACGGCGATTTGGTTGAGGCCAAGATGCTTCTAGAATGCAACCCTTGTCTTTCTAAATACTCAACCTTTGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCTTTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGGAACTATTGCGGCCAGACGGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTTCAAACCCTTCTGCTCTTCAGATGCAATGTTGTGAGATCGGATTATCTCAGTGGAAGGACTGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGATGCATTAGACTCGTCATGGCTGACTTTGTTCCAAGTGCTCCGTACGAGGCTTTACATGCTCCCACGGATGCTGACATTGATGACGGATCAAATGTTAAAAGCAAACATGAACAAAGCGCACTGTCCAAGTTTGTAAACAAGGCGGCTGATGCCGGTATTACAGCCCTTCATATGGCTGCCTTAAATGGCTATTTCGATTGTGTACAACTGCTTCTTGATCTCAATGCAAATGTCTCAGCTGCGACATTTCACTATGGAACGGCAATGGATTTAATAGGAGCCGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGAAATTTGAAATGCTGTCAGATCCTCCTTTCGGGAGGTGCAAGTCGGACAGCTTTGAATTGCAATGGATGGCTTCCACTCGATGTTGCGAGGATGTGGGGGCGTCACTGGCTTGAACCAATATTAGCACCCACTTCTGAAGCTACAATACCATCATTCCCTCCATCAAATTATTTGTCTTTGCCACTTATGAGTGTGCTCAACATAGCCAGAGAGAGTGGATTGCAATCATCTCCTACCTCTTCCGACGAAATTGATTTTTGTGCCGTTTGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTCGACATGAGCTTTGTGTTAAATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCGTCCGAAATGCTCGGCCCGCCGGGCTCCATCCCTTGCCCTCTATGTAGACGTGGAATTGTCTCTTTTGTCAAGTTACCAGGTTCACAAGCAAGAGAGACTAAAGTCAACGGATCGCTCGGCTTATGTACTCCATGCATGCTACATCCACGTGATATAAATAGGCCATCTTTCTTTCATACACCGGAGATTCGAAAGAATCGTGTCGCTTCTATTCCTTCAGAGATGCTTTGCCCTGTGACTTGTAGTCCATTTCCATCAGTTGCACTTCCTCTATGTACCTGCAATGATGGTCCTTGTCCACCATTTGAGCCCCGAGAAGTTGAAGCTCAAGATGAATCGCCTCGTCACTCACAAGTATCATCAACGGATCAGGATAAAATGGAAGGGCCAAGATTGGAGAAAACAACATGCTCAAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAGATCAACGCTTGA 1539 0.4672 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLSKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVVRSDYLSGRTALHFAAVNGHVRCIRLVMADFVPSAPYEALHAPTDADIDDGSNVKSKHEQSALSKFVNKAADAGITALHMAALNGYFDCVQLLLDLNANVSAATFHYGTAMDLIGAGSTPLHYAACGGNLKCCQILLSGGASRTALNCNGWLPLDVARMWGRHWLEPILAPTSEATIPSFPPSNYLSLPLMSVLNIARESGLQSSPTSSDEIDFCAVCLERPCSVAAEGCRHELCVKCALYLCSTSNVSSEMLGPPGSIPCPLCRRGIVSFVKLPGSQARETKVNGSLGLCTPCMLHPRDINRPSFFHTPEIRKNRVASIPSEMLCPVTCSPFPSVALPLCTCNDGPCPPFEPREVEAQDESPRHSQVSSTDQDKMEGPRLEKTTCSSMFWGRRSCSREHQCNSEINA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3500 512 MobiDBLite consensus disorder prediction 458 486 - -
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Ahy15g3500 512 Gene3D - 221 273 IPR036770 -
Ahy15g3500 512 Pfam Ankyrin repeat 221 252 IPR002110 GO:0005515
Ahy15g3500 512 Pfam Ankyrin repeats (many copies) 177 217 IPR002110 GO:0005515
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Ahy15g3500 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Ahy15g3500 512 PANTHER HOMEOBOX PROTEIN WARIAI 1 512 - -
Ahy15g3500 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Ahy15g3500 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 512 - -
Ahy15g3500 512 MobiDBLite consensus disorder prediction 458 485 - -
Ahy15g3500 512 Gene3D - 108 220 IPR036770 -
Ahy15g3500 512 Gene3D - 8 107 IPR036770 -
Ahy15g3500 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Ahy15g3500 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Ahy15g3500 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Ahy15g3500 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Ahy15g3500 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Ahy15g3500 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Ahy15g3500 512 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Ahy15g3500 512 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Ahy15g3500 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Ahy15g3500 512 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Ahy15g3500 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Ahy15g3500 512 SUPERFAMILY RING/U-box 318 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3500 Ahy-Chr15 157742409 157746527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3500 17 287 Miscellaneous Gene Families AT5G02620 26.812 1.14e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3500 K19044 - gmx:100812809 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3500 15 157742409 157746527 Ahy15g3500 15 157742409 157746527 ECH
Ahy15g3500 15 157742409 157746527 Ahy5g3090 5 112570403 112574507 hybridization
Ahy15g3500 15 157742409 157746527 Ahy19g3536 19 158129069 158133531 PCT
Ahy15g3500 15 157742409 157746527 Ahy9g2089 9 109556121 109560605 PCT
Ahy19g3536 19 158129069 158133531 Ahy15g3500 15 157742409 157746527 PCT
Ahy9g2089 9 109556121 109560605 Ahy15g3500 15 157742409 157746527 PCT