Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2071 ATGAATTCAGTAACCCTTTTAGGTCCAAGAATAGTTCACAAGATTCCCCATTGCTTGATTATGTCACGGAAATTATGTGACGGTATTTTTCATGGTGATGATGGGTTTGAATGCGTCGAGGAACCTTTAAAAAGGATAGTTTCGGAGTATGATTCCAACGAGGGTGAAAGGCTCCATGTGGATGAGGATTGGAGCTGTAACCATAATCAGTTTTCGCTTAGAAGAGAGTTCTTAGAGAATGTGAAGCTAGATGCCAAGAAGGTCCTTGAGGTTCTTCGACAAGATGGACCAGGTCTTGATGCTAGGTTAGTTTTAGATGAATTGAATGTAAGTCCGTCCGGGATTCTTGTCAGAGAAGTTCTCGCTGGAATCTTGAAGAGCATAAATTTTGAGAATAAAACCAGGTGTGCCAAATTGGCATACAAGTTTTTAGTGTGGTGCAATCAGCAGGAGGATTACAGGCCCACTTCAAATGCATATCACCTGATGATGAACATATATGCCGAGTGCCTGGAGTTTAAGGCTTTGTGGAGGTTGGTTGATGAGATGATCGAGAAAGGGTTTCCTGCTACTGCTCGTACGTTCAACATTTTGATTCGAACTTGTGGTGAGGCAGGTTTAGCTAAGAAATTGGTGGAGAGGTTTATTAAATCAATGAATTTTAATTATAGGCCTTTTAAGCACTCCTACAATGCGATTCTGCATGGTCTTTTTGTGTTAAGCCAGTACAAGTTGATTGAGTGGGTTCATCAACAAATGTTGCTGGAGGGTTTTTCTTCAGATGTTTTAACATACAATATTGTCATGTTTTCTAAGTACAAACTTGGAAAGATGGATCAGTTCCACATACTGCTGGATGAGATGGGTAGGAATGGATTTTCTCCAGATTTTCACACCTATAACATTCTTCTTCATGTTCTTGGTAAAGGAGACAAGCCCCTTGCAGCTCTTAATCTTCTAAATCTCATGAGAGAAACAGGTATAGAGCCAACAGTGCTTCATTACACCACATTGATAGATGGACTCAGCAGAGCTGGGAATGTGGATGCATGCAAATACTTTTTTGATGAAATAATAAAGAATGGGGGCACGCCTGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCAGGTGAGCTTGAGAAAGCTCTGGAAATGTTTCGAGAGATGATTTCTAGAGAACAGGTCCCAAATGTGTTTACATACAATTCCATAATTCGGGGATTATGTAAGGCACGAAAGTTCAAGGAAGCCTGCTCAATGCTCAAGGAGATGGAGACCAAAGGTTGTAGTCCAAATTTTGTTGTCTATAATACATTAGTGAGTAGTTTGCGCAATGCCGGAAGAACCAACGATGCTCATGAAGTGATAAAACAGATGATGGAGAAGCGGAAGTATGGTCACATACTTTCGAAATTTCAAAAGGACTAA 1440 0.4049 MNSVTLLGPRIVHKIPHCLIMSRKLCDGIFHGDDGFECVEEPLKRIVSEYDSNEGERLHVDEDWSCNHNQFSLRREFLENVKLDAKKVLEVLRQDGPGLDARLVLDELNVSPSGILVREVLAGILKSINFENKTRCAKLAYKFLVWCNQQEDYRPTSNAYHLMMNIYAECLEFKALWRLVDEMIEKGFPATARTFNILIRTCGEAGLAKKLVERFIKSMNFNYRPFKHSYNAILHGLFVLSQYKLIEWVHQQMLLEGFSSDVLTYNIVMFSKYKLGKMDQFHILLDEMGRNGFSPDFHTYNILLHVLGKGDKPLAALNLLNLMRETGIEPTVLHYTTLIDGLSRAGNVDACKYFFDEIIKNGGTPDVVAYTVMITGYVVAGELEKALEMFREMISREQVPNVFTYNSIIRGLCKARKFKEACSMLKEMETKGCSPNFVVYNTLVSSLRNAGRTNDAHEVIKQMMEKRKYGHILSKFQKD* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2071 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Ahy9g2071 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 466 IPR002885 -
Ahy9g2071 479 TIGRFAM PPR: pentatricopeptide repeat domain 403 436 IPR002885 -
Ahy9g2071 479 TIGRFAM PPR: pentatricopeptide repeat domain 298 332 IPR002885 -
Ahy9g2071 479 TIGRFAM PPR: pentatricopeptide repeat domain 438 466 IPR002885 -
Ahy9g2071 479 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
Ahy9g2071 479 TIGRFAM PPR: pentatricopeptide repeat domain 335 367 IPR002885 -
Ahy9g2071 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Ahy9g2071 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Ahy9g2071 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Ahy9g2071 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Ahy9g2071 479 Pfam PPR repeat 327 357 IPR002885 -
Ahy9g2071 479 Pfam PPR repeat 431 463 IPR002885 -
Ahy9g2071 479 Gene3D Tetratricopeptide repeat domain 69 241 IPR011990 GO:0005515
Ahy9g2071 479 Gene3D Tetratricopeptide repeat domain 242 342 IPR011990 GO:0005515
Ahy9g2071 479 PANTHER OS10G0506000 PROTEIN 1 478 - -
Ahy9g2071 479 Gene3D Tetratricopeptide repeat domain 347 479 IPR011990 GO:0005515
Ahy9g2071 479 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 478 - -
Ahy9g2071 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Ahy9g2071 479 Pfam PPR repeat family 365 414 IPR002885 -
Ahy9g2071 479 Pfam PPR repeat family 261 307 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2071 Ahy-Chr9 109424133 109425993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2071 153 466 Glycosyltransferase AT1G05670 26.115 1.74e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2071 - - ccaj:109794849 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3555 19 158221193 158222925 Ahy9g2071 9 109424133 109425993 hybridization