Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3555 ATGAATTCAGTAACCCTTTTAGGTCCAAGAATAGTTCACAAAATTCCCCATTGCTTGATTATGTCACGGAAATTATGTGACGGTAGTTTCCTTGGTGATGATGGGTTTGAATGCGTCGAGGAACCTTTAAAAAGGATAGTTTCGGAGTATGATTCCAACGAGGGTGAAAGGCTCCATGTGGATGAGGATTGGAGCTGTAACCATAATCAGTTTTCGCTTAGAAGAGGGTTCTTAGAAAACGTGAAGCTAGATGCCAAGAAGGTCCTTGAGGTTCTTCGACAAGATGGACCGGGCCTTGATGCTAGGTTAGTTTTAGATGAATTGAATGTAAGTCCGTCCGGGATTCTTGTCAGAGAAGTTCTCGCTGGAATCTTGAAGAGCATAAATTTTGAGAATAAAACCAGGTGTGCCAAATTGGCATACAAGTTTTTCGTGTGGTGCAATCAGCAGGAGGACTACAGACCCACTTCAAATGCATATCACTTGATGATGAACATATATGCTGAGTGCCTGGAGTTTAAGGCGTTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGGTTTCCTGCTACTGCTCGTACGTTCAACATTTTGATTCGAACTTGTGGTGAGGCAGGTTTAGCTAAGAAATTGGTGGAGAGGTTTATTAAATCAATGACTTTTAATTATAGGCCTTTTAAGCACTCCTACAATGCGATTCTGCATGGTCTTTTTGTGTTACGCCAGTACAAGTTGATTGAGTGGGTTCATCAACAAATGTTGCTGGAGGGTTTTTCTTCAGATGTTTTAACATACAATATTGTCATGTTTTCTAAGTACAAACTTGGAAAGATGGATCAGTTCCACATACTGCTTGATGAGATGGGTAGGAATGGATTTTCTCCAGATTTTCACACCTATAACATTCTTCTTCATGTCCTTGGTAAAGGAGACAAGCCCCTTGCAGCTCTTAATCTTCTAAATCTCATGAGAGAAACAGGTATAGAGCCAACAGTGCTTCATTACACCACATTGATAGATGGACTCAGCAGAGCTGGGAATGTGGATGCATGCAAATACTTTTTTGATGAAATAATAAAGAATGGGGGCACGCCTGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCAGGTGAGCTTGAGAAAGCTCTGGAAATGTTTCGAGAGATGATTTCTAGAGAACAGGTCCCAAATGTGTTTACATACAATTCCATAATTCGGGGATTATGTAAGGCACGAAAGTTCAAGGAAGCCTGCTCAATGCTCAAGGAGATGGAGACCAAAGGTTGTAGTCCAAATTTTGTTGTCTATAATACATTAGTGAGTAGTTTGCGCAATGCCGGAAGAACCAACGATGCTCATGAAGTGATAAAACAGATGATGGAGAAGCGGAAGTATGCTCACATACTTTCGAGGTTTCAAAAGGACTAA 1440 0.4097 MNSVTLLGPRIVHKIPHCLIMSRKLCDGSFLGDDGFECVEEPLKRIVSEYDSNEGERLHVDEDWSCNHNQFSLRRGFLENVKLDAKKVLEVLRQDGPGLDARLVLDELNVSPSGILVREVLAGILKSINFENKTRCAKLAYKFFVWCNQQEDYRPTSNAYHLMMNIYAECLEFKALWRLVDEMIEKGFPATARTFNILIRTCGEAGLAKKLVERFIKSMTFNYRPFKHSYNAILHGLFVLRQYKLIEWVHQQMLLEGFSSDVLTYNIVMFSKYKLGKMDQFHILLDEMGRNGFSPDFHTYNILLHVLGKGDKPLAALNLLNLMRETGIEPTVLHYTTLIDGLSRAGNVDACKYFFDEIIKNGGTPDVVAYTVMITGYVVAGELEKALEMFREMISREQVPNVFTYNSIIRGLCKARKFKEACSMLKEMETKGCSPNFVVYNTLVSSLRNAGRTNDAHEVIKQMMEKRKYAHILSRFQKD* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3555 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Ahy19g3555 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 466 IPR002885 -
Ahy19g3555 479 Pfam PPR repeat 327 357 IPR002885 -
Ahy19g3555 479 Pfam PPR repeat 431 463 IPR002885 -
Ahy19g3555 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Ahy19g3555 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Ahy19g3555 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Ahy19g3555 479 Pfam PPR repeat family 365 414 IPR002885 -
Ahy19g3555 479 Pfam PPR repeat family 261 307 IPR002885 -
Ahy19g3555 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Ahy19g3555 479 Gene3D Tetratricopeptide repeat domain 116 238 IPR011990 GO:0005515
Ahy19g3555 479 Gene3D Tetratricopeptide repeat domain 240 343 IPR011990 GO:0005515
Ahy19g3555 479 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 478 - -
Ahy19g3555 479 Gene3D Tetratricopeptide repeat domain 350 479 IPR011990 GO:0005515
Ahy19g3555 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Ahy19g3555 479 PANTHER OS10G0506000 PROTEIN 1 478 - -
Ahy19g3555 479 TIGRFAM PPR: pentatricopeptide repeat domain 403 436 IPR002885 -
Ahy19g3555 479 TIGRFAM PPR: pentatricopeptide repeat domain 298 332 IPR002885 -
Ahy19g3555 479 TIGRFAM PPR: pentatricopeptide repeat domain 438 466 IPR002885 -
Ahy19g3555 479 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
Ahy19g3555 479 TIGRFAM PPR: pentatricopeptide repeat domain 335 367 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3555 Ahy-Chr19 158221193 158222925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3555 258 474 Glycosyltransferase AT1G05670 24.771 1.36e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3555 - - ccaj:109794849 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3555 19 158221193 158222925 Ahy19g3555 19 158221193 158222925 ECH
Ahy19g3555 19 158221193 158222925 Ahy9g2071 9 109424133 109425993 hybridization