Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1110 ATGTCGGTGATTTCATGCTTCTCTTTTGGCCGAACCAAAATCTTCAACTTTACGGCTTCAACAACTTCAAGATCCCCCTTTTCCTCAAAAACCAGCATACCTACCTCATCAACAGCCAAAAAAACTGTGCAACGTTCAGTTAAAATTGAACAACGCACGAAGTTTGGAATAACTGATATTGATGGATATCCGTACAAAGGAGCAAATGAATTGGTTCAACGCAGTGAACCACCACCCCATTGGGAAAAGGTGCTTGAAGGGATTCGCAAAATGATGAGTTTTTCTAAAGATGGACCAGTTGACTCAATGGAATCTGAAGAAGCTGCTGATACTGTACCTCCTAAGGAAAGAAGATTTGCTGTCTTGGCATCTACTGTTTTATCAAGCCAAACTAAGGGGCATGTTTCTCAAGGAGCAACTAAACGTCTTCGGCTAAATGGTCTGCTTACTGCTGATACAATCAACAAAGCTGATGAAGAAACCATCAGAAAGTTGATTTACCCTGTTGGATTTTATAAGAGAAAAGCCAGCAACTTGAAAAAGATTGCAGATATTTGTCTCATGAAATATGATGGAGACATACCTAATTCAGTTGAGGAACTGCTCTTACTTCCAGGTGTAGGTCCTAAGATAGCTTATTTGGTTATGATTCTTGGATGGAACAACGTTCAAGGGATATGCGTCGATACTCATGTCCACCGCATTTGCAATCGCCTTGGATGGGTTTCCAGAGCAGGCACAAAGCAGAAAACATCAACACCGGAAGAAACAAGAAAGGCGTTGCAGCGTTGGCTCCCAAGAGAAGAATGGGTTCCAATAAATCCCCTTATGGTAGATTTTGGTCGAACAATTTGCACTCCTTTACGACCTCATTGTGGAAAGTGTTGCATAAGTAGTCTGTGCCCATCAGCATTCACAGAGACTTCAAAGCCATCTTCCAAATCCAATAAGTCCGAACTGAAAAAGAGGCTTTAA 975 0.4154 MSVISCFSFGRTKIFNFTASTTSRSPFSSKTSIPTSSTAKKTVQRSVKIEQRTKFGITDIDGYPYKGANELVQRSEPPPHWEKVLEGIRKMMSFSKDGPVDSMESEEAADTVPPKERRFAVLASTVLSSQTKGHVSQGATKRLRLNGLLTADTINKADEETIRKLIYPVGFYKRKASNLKKIADICLMKYDGDIPNSVEELLLLPGVGPKIAYLVMILGWNNVQGICVDTHVHRICNRLGWVSRAGTKQKTSTPEETRKALQRWLPREEWVPINPLMVDFGRTICTPLRPHCGKCCISSLCPSAFTETSKPSSKSNKSELKKRL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1110 324 CDD ENDO3c 119 281 IPR003265 GO:0006284
Ahy8g1110 324 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 57 318 - -
Ahy8g1110 324 SMART ccc3 284 304 IPR003651 GO:0051539
Ahy8g1110 324 Hamap Endonuclease III-like protein 1 [NTHL1]. 77 307 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Ahy8g1110 324 SMART endo3end 127 283 IPR003265 GO:0006284
Ahy8g1110 324 Pfam Helix-hairpin-helix motif 189 216 IPR000445 GO:0003677
Ahy8g1110 324 ProSitePatterns Endonuclease III family signature. 192 221 IPR004036 -
Ahy8g1110 324 Gene3D - 219 306 IPR023170 -
Ahy8g1110 324 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 57 318 - -
Ahy8g1110 324 MobiDBLite consensus disorder prediction 21 41 - -
Ahy8g1110 324 Gene3D Hypothetical protein; domain 2 107 218 - -
Ahy8g1110 324 MobiDBLite consensus disorder prediction 305 324 - -
Ahy8g1110 324 Pfam HhH-GPD superfamily base excision DNA repair protein 124 266 IPR003265 GO:0006284
Ahy8g1110 324 SUPERFAMILY DNA-glycosylase 113 308 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1110 Ahy-Chr8 26164701 26166957 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1110 K10773 - gmx:100818398 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0312 18 2594306 2596682 Ahy8g1110 8 26164701 26166957 hybridization
Ahy8g1110 8 26164701 26166957 Ahy13g0588 13 6157186 6161479 PCT
Ahy13g0588 13 6157186 6161479 Ahy8g1110 8 26164701 26166957 PCT