Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0588 ATGTTGGTCTTTTCGATTACACCTCGATCCTTTGGTTTGGGGCGAATCAAAGTCTCGTTTTTGATGACTCAAACAACGCCATCTCTTCCCTCCAATTTCAACACCGACACACCCACCTCGGACTCCTCCTCTCACGCTGCTTCTGTGTCCAAAGCTCGTGTCTTTGTGAGGAGAAGCAAGAGGCCCAAAACCACTCTTGTGGCACTTCAACAAAAGGAGCTTCAGCCCCCAACACGTGATCATGACAAAAGTTCTGGCCTTCCTGAAATTGAAGATTTTACATACAGTGGAGCAAATAATGCATTTACTCAATCCAGTAAATCAGAATTGGGCTTGGACGCGACTCTTGTGGAAAGTGAAGCTACTTCACCTAGACACAGTGGTGAATTACCTGCACACTGGGAAAGGGTGCTTGAGGGGATTCGCAGAATGAGGTGTTCTGCAGAAGCACCGGTAGACACTATGGGATGTGAGAAAGCTGGCGATACTCTACCTCCTAAGGAAAGAAGATTTGCTGTCCTAGTTTCTTCTCTTTTGTCAAGCCAAACCAAAGATCATGTTACTCATGGAGCAATCCAACGTCTTCTTGAAAATGGCCTACTTACCCCTGACGCAATCAACAATGCTGATGAAGAAACCATCAAAAAGATGCTTTACCCTGTTGGGTTCTATACAAGAAAAGCCACCAACTTGAAAAAAATCGCAAACATTTGTCTCATGAAGTATGACGGAGACATACCTAGCACAATTGAGCAATTACTCTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTCATGAATGTTGGATGGAACAATGTTCAAGGAATATGTGTTGATACTCATGTCCACCGCATCTGCAATCGGCTTGGATGGGTGTCTAGACCCAGCACAAAACAGAAAACTCTAACACCTGAAGAAACAAGGGAGGCATTGCAAAGATGGCTTCCAAGGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACAAACCATTTGCACTCCCTTGAGACCTCGTTGTGGAGAATGTGGTATTAGTCATTTGTGCCCCTCGGCATTCAAGGAGGCCTCTAACTCAAGCCCATCTTCCAAGCCCAAAAAGTCTGGGCCTAACAAGAAGCGTTAG 1137 0.4512 MLVFSITPRSFGLGRIKVSFLMTQTTPSLPSNFNTDTPTSDSSSHAASVSKARVFVRRSKRPKTTLVALQQKELQPPTRDHDKSSGLPEIEDFTYSGANNAFTQSSKSELGLDATLVESEATSPRHSGELPAHWERVLEGIRRMRCSAEAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDHVTHGAIQRLLENGLLTPDAINNADEETIKKMLYPVGFYTRKATNLKKIANICLMKYDGDIPSTIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRPSTKQKTLTPEETREALQRWLPREEWVPINPLLVGFGQTICTPLRPRCGECGISHLCPSAFKEASNSSPSSKPKKSGPNKKR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0588 378 Hamap Endonuclease III-like protein 1 [NTHL1]. 130 359 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Ahy13g0588 378 SUPERFAMILY DNA-glycosylase 142 368 IPR011257 GO:0003824|GO:0006281
Ahy13g0588 378 ProSitePatterns Endonuclease III family signature. 244 273 IPR004036 -
Ahy13g0588 378 MobiDBLite consensus disorder prediction 357 378 - -
Ahy13g0588 378 Gene3D - 269 359 IPR023170 -
Ahy13g0588 378 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 68 376 - -
Ahy13g0588 378 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 337 353 IPR004035 -
Ahy13g0588 378 SMART ccc3 336 356 IPR003651 GO:0051539
Ahy13g0588 378 MobiDBLite consensus disorder prediction 70 90 - -
Ahy13g0588 378 CDD ENDO3c 171 333 IPR003265 GO:0006284
Ahy13g0588 378 Pfam Helix-hairpin-helix motif 241 269 IPR000445 GO:0003677
Ahy13g0588 378 Pfam HhH-GPD superfamily base excision DNA repair protein 175 303 IPR003265 GO:0006284
Ahy13g0588 378 SMART endo3end 179 335 IPR003265 GO:0006284
Ahy13g0588 378 MobiDBLite consensus disorder prediction 27 49 - -
Ahy13g0588 378 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 68 376 - -
Ahy13g0588 378 MobiDBLite consensus disorder prediction 27 54 - -
Ahy13g0588 378 Gene3D Hypothetical protein; domain 2 157 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0588 Ahy-Chr13 6157186 6161479 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0588 K10773 - gmx:100818398 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0312 18 2594306 2596682 Ahy13g0588 13 6157186 6161479 PCT
Ahy8g1110 8 26164701 26166957 Ahy13g0588 13 6157186 6161479 PCT
Ahy13g0588 13 6157186 6161479 Ahy18g0312 18 2594306 2596682 PCT
Ahy13g0588 13 6157186 6161479 Ahy8g1110 8 26164701 26166957 PCT