Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0836 ATGGGTGGCACTGGCACCGTTGTTTCTCAGTCGTGTGCTGCTTCAACCCTCCTTCATTCTCGCTTCTCACTCCCTTCTATCCGCTCTTGCACTTCCTCTGCCACCGCCACACCTTCTACTTCTTCAGACACGATCACTCCTCCAACCCCTCTCAAGAAACGGGTAGTCTCGGGAGTGCAGCCAACTGGGTCAATTCACCTTGGAAACTATTTTGGAGCCATCAAGAATTGGGTTGCACTTCAGAATACATATGATACACTTTTCTTCATTGTAGACCTCCACGCGATTACATTACCTTATGAAGCACAACAATTATCTAAGGCTTCAAGGTCAACTGCAGCTATTTATCTGGCATGTGGAGTGGATCCTTCTAAGGCTTCTGTTTTTGTACAGTCTCATGTTCGGGCACATGTAGAATTAATGTGGTTGCTAAGTTCTGCAACACCAATTGGTTGGCTGAACAAAATGATACAGTTCAAAGAGAAGTCTCGCAAGGCGGGTGATGAAGAAGTTGGAGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACTCGTGACTTAGCAGAACGGGTTAATTACTTATATGGAGGAAGAAAGTGGAAAAAATTAGGAGGTCGAGGTGGTGCAATATTTAAAGTTCCGGAGCCCCTTATACCTCCAGCTGGAGCCCGAATTATGTCCCTAACGGATGGCCTTTCTAAGATGTCAAAGTCCGCACCTTCTGATCAATCGAGAATCAATTTGCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATGCATTTCCAGGATTGGAGTTTGATAATCCTGAGAGGCCAGAATGTAACAATCTTCTTTCCATATACCAGCTCATTTCGGGAAAGACAAAAGAGGAAGTTGTTCAGGAGTGCCAAAACATGAACTGGGGCGCCTTCAAAACTCTCTTAACAGATGCCTTGATTGATCATTTGCGTCCAATTCAGGTTCGCTATGACGAAATCATGTCCGATTCGGGTTACTTAGATGATGTTTTAGCAGAAGGTGCTAGAAATGCATCAGAAATAGCAGATGCCACTGTCAATAATGTTTACCAAGCAATGGGATTTTTGGGGAGAAGGTGA 1185 0.4371 MGGTGTVVSQSCAASTLLHSRFSLPSIRSCTSSATATPSTSSDTITPPTPLKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNTYDTLFFIVDLHAITLPYEAQQLSKASRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINLLDPKDLIANKIKRCKTDAFPGLEFDNPERPECNNLLSIYQLISGKTKEEVVQECQNMNWGAFKTLLTDALIDHLRPIQVRYDEIMSDSGYLDDVLAEGARNASEIADATVNNVYQAMGFLGRR* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0836 394 Pfam tRNA synthetases class I (W and Y) 54 345 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ahy8g0836 394 MobiDBLite consensus disorder prediction 32 48 - -
Ahy8g0836 394 Gene3D - 250 360 - -
Ahy8g0836 394 Gene3D HUPs 55 389 IPR014729 -
Ahy8g0836 394 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 42 390 - -
Ahy8g0836 394 SUPERFAMILY Nucleotidylyl transferase 53 390 - -
Ahy8g0836 394 PRINTS Tryptophanyl-tRNA synthetase signature 115 134 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy8g0836 394 PRINTS Tryptophanyl-tRNA synthetase signature 192 213 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy8g0836 394 PRINTS Tryptophanyl-tRNA synthetase signature 257 267 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy8g0836 394 PRINTS Tryptophanyl-tRNA synthetase signature 65 81 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy8g0836 394 CDD TrpRS_core 54 342 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy8g0836 394 TIGRFAM trpS: tryptophan--tRNA ligase 52 390 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy8g0836 394 Hamap Tryptophan--tRNA ligase [trpS]. 52 391 IPR024109 GO:0004830
Ahy8g0836 394 PANTHER BNAA04G15180D PROTEIN 42 390 - -
Ahy8g0836 394 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 61 70 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ahy8g0836 394 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0836 Ahy-Chr8 16519727 16524982 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0836 K01867 - gmx:100780447 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3125 17 132982531 132987804 Ahy8g0836 8 16519727 16524982 hybridization