Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3125 ATGGGTGGCACTGGCACCGTTGTTTCTCACTTCCTCAATCTATCATCATCTTCTTCTTCTTATTCTCCACGCTTGCTTGCTCCTTCACTGTCGTGTGCTGCTTCAACCCTCCTTCATTCTCGCTTCTCACTCCCTTCTATTCGCTCTTGCACTTCCTCTGCCACCGCCGCACCTTCTACTTCTTCAGACCCGATCACTCCTCCAACCCCTCTCAAGAAAAGGGTAGTCTCGGGAGTGCAGCCAACTGGGTCAATTCACCTTGGAAACTATTTTGGAGCCATCAAGAATTGGGTTGCACTTCAGAATACATATGATACACTTTTCTTCATTGTAGACCTCCACGCGATTACATTACCTTATGAAGCACAACAATTATCTAAGGCTTCAAGGTCAACTGCAGCTATTTATCTGGCATGTGGAGTGGATCCTTCTAAGGCTTCTGTTTTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGTTGCTAAGTTCTGCAACACCAATTGGTTGGCTGAACAAAATGATACAGTTCAAAGAGAAATCTCGCAAGGCGGGTGATGAAGAAGTTGGAGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACTCGTGACTTAGCAGAACGGGTTAATTACTTATATGGAGGAAGAAAGTGGAAAAAATTAGGAGGTCGAGGTGGTGCAATATTTAAAGTTCCGGAGCCCCTTATACCTCCAGCTGGAGCCCGAATTATGTCCCTAACAGATGGCCTTTCTAAGATGTCAAAGTCTGCACCTTCTGATCAATCGAGAATCAATTTGCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATGCATTTCCAGGATTGGAGTTTGATAATCCTGAGAGGCCAGAATGTAACAATCTTCTTTCCATATACCAGCTCATTTCGGGAAAGACAAAAGAGGAAGTTGTTCAGGAGTGCCAAAACATGAACTGGGGCACATTCAAAACTCTCTTAACAGATGCCTTGATTGATCATTTGCATCCAATTCAGGTTCGCTATGATGAAATCATGTCCGAATCGGGTTACTTAGATGAAGTTTTAGCAGAAGGTGCTAGAAATGCATCAGAAATAGCAGATGCCACTGTCAATAATGTTTACCAAGCAATGGGATTTTTGGGGAGAAGGTGA 1245 0.4313 MGGTGTVVSHFLNLSSSSSSYSPRLLAPSLSCAASTLLHSRFSLPSIRSCTSSATAAPSTSSDPITPPTPLKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNTYDTLFFIVDLHAITLPYEAQQLSKASRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINLLDPKDLIANKIKRCKTDAFPGLEFDNPERPECNNLLSIYQLISGKTKEEVVQECQNMNWGTFKTLLTDALIDHLHPIQVRYDEIMSESGYLDEVLAEGARNASEIADATVNNVYQAMGFLGRR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3125 414 CDD TrpRS_core 74 362 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy17g3125 414 SUPERFAMILY Nucleotidylyl transferase 73 410 - -
Ahy17g3125 414 Gene3D - 270 380 - -
Ahy17g3125 414 Pfam tRNA synthetases class I (W and Y) 74 365 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ahy17g3125 414 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 62 410 - -
Ahy17g3125 414 PANTHER BNAA04G15180D PROTEIN 62 410 - -
Ahy17g3125 414 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 81 90 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ahy17g3125 414 TIGRFAM trpS: tryptophan--tRNA ligase 72 410 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy17g3125 414 Gene3D HUPs 75 409 IPR014729 -
Ahy17g3125 414 Hamap Tryptophan--tRNA ligase [trpS]. 72 411 IPR024109 GO:0004830
Ahy17g3125 414 PRINTS Tryptophanyl-tRNA synthetase signature 85 101 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy17g3125 414 PRINTS Tryptophanyl-tRNA synthetase signature 277 287 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy17g3125 414 PRINTS Tryptophanyl-tRNA synthetase signature 212 233 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ahy17g3125 414 PRINTS Tryptophanyl-tRNA synthetase signature 135 154 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3125 Ahy-Chr17 132982531 132987804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3125 K01867 - gmx:100780447 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3125 17 132982531 132987804 Ahy8g0836 8 16519727 16524982 hybridization