LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g0630	ATGTTACGAGCCTCAGAAAAACCAAACGCAGTGATGGCGCACTTACCCGCCCTCCGGGTTCTCCTTCGCCACATTAACTGCCTCATTCCGCCACCGCGCACATCTATGCCTGCACTCTGTACCATCCGTGCCACGTGTCACTTCCTCCTTCTCTCCCCTAAACCTCGCAAACTCCACGCCACCGCAACTTCCAAAGGTCCAGAGAACCACGCGCTGCTGCTCAACAGAGACGAGCGCGTGGCGAGAAACGTTACTCCAAGCGATGTAGTTGAGAAAGGGAGCACAATCGCGGCGATAGTAACGTCGTTGGGAGGTCCACCTGCCGCCGTCGGAATCGTTCGACTCTCAGGTCCTTCTGCGGTTTCCGTGGCGGGTCGAGTGTTTCGACCCGCCAAAAGGAGCAAGAACAATGATTGGAAACCGACGAGCCACGTGGTGGAGTACGGAGTCGTTTTGGATTCGGAGGGGAATGTGATCGATGAGGTTTTGGCGGTGCCGATGCTGGCGCCAAAATCTTACACGCGCGAGGACGTTGTTGAGATTCAGTGTCATGGAAGTGAAGTGTGTCTGCGCCGAGTTCTCAGAACTTGCTTGGAAGCTGGAGCTACACTTGCCCAGCCAGGGGAGTTTACACTTCGTGCGTTTCTAAATGGTCGGTTGGATCTATCACAAGCTGAGAATGTTGGAAGGTTGATTACCGCCAAGTCTGTGGCTGCTGCAGATGCAGCACTGGCCGGAATCCAGGGTGGTTTCTCCTCTCTTGTAAGATCGTTGAGAATGCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTAGATTTTGAGGATGAGATGCCTCCTTTGGATTTGAATATTATTATGGATAAAATTCATAGCATGTCGCAAGATGTTGAGAGTGCATTGGAGGCAGAAAATTATGACAGGCTTCTGCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTAAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTGTCAGTGTCAATGGTATCCCTATAACCCTTCTTGATACTGCAGGAATCAGGGACACTGATGATGTTGTGGAAAAGATTGGTGTAGAGAGATCAGAAGCTGTTGCTAGGGGTGCTGATCTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTAGAAAGGATTCAGTCTGCTAAGAGTTCAACTGGATCCTTGATCCCAGTAATACTTGCGGTCAACAAGATAGATTGCAATCCACGCGCTGAGACAGATTGGGACAGAGGATGTCAGAGTCATGATATCTTCAGTAAACGCGTGTTTACGTGTGCTGTTACTGGTCAAGGATTACAAGACCTAGAGAGGGCAGTACTGGAGCTTGTGGGACTTGATGCCATTCCTTCTGGGGGTCGCCAATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGAAAGGTTACAATCGTCAATAAAGGAGGAACTACCATTAGATTTTTGGACAATTGATTTGAGGGATGCTGCATTATCCCTTGGACAGATAAGTGGAGAAGATATATCTGAAGAAGTATTATCAAATATATTTGGGAAGTTCTGTATTGGTAAATAG	1692	0.4811	MLRASEKPNAVMAHLPALRVLLRHINCLIPPPRTSMPALCTIRATCHFLLLSPKPRKLHATATSKGPENHALLLNRDERVARNVTPSDVVEKGSTIAAIVTSLGGPPAAVGIVRLSGPSAVSVAGRVFRPAKRSKNNDWKPTSHVVEYGVVLDSEGNVIDEVLAVPMLAPKSYTREDVVEIQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRMQCIELLTEIEARLDFEDEMPPLDLNIIMDKIHSMSQDVESALEAENYDRLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDVVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKSSTGSLIPVILAVNKIDCNPRAETDWDRGCQSHDIFSKRVFTCAVTGQGLQDLERAVLELVGLDAIPSGGRQWTVNQRQCEQLVRTKEALERLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK*	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g0630	563	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	108	563	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Ahy8g0630	563	Gene3D	-	315	491	IPR027417	-
	Ahy8g0630	563	Pfam	50S ribosome-binding GTPase	316	437	IPR006073	GO:0005525
	Ahy8g0630	563	Gene3D	Probable tRNA modification gtpase trme; domain 1	82	219	IPR027266	GO:0005515
	Ahy8g0630	563	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	93	563	-	-
	Ahy8g0630	563	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	479	IPR027417	-
	Ahy8g0630	563	Pfam	MnmE helical domain	222	560	IPR025867	-
	Ahy8g0630	563	Pfam	GTP-binding protein TrmE N-terminus	95	219	IPR018948	-
	Ahy8g0630	563	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	314	484	IPR031168	-
	Ahy8g0630	563	Gene3D	tRNA modification GTPase MnmE domain 2	220	563	IPR027368	-
	Ahy8g0630	563	Hamap	tRNA modification GTPase MnmE [mnmE].	94	563	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Ahy8g0630	563	Coils	Coil	502	522	-	-
	Ahy8g0630	563	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	93	563	-	-
	Ahy8g0630	563	TIGRFAM	small_GTP: small GTP-binding protein domain	315	442	IPR005225	GO:0005525
	Ahy8g0630	563	CDD	trmE	312	484	IPR031168	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g0630	Ahy-Chr8	12413812	12417043	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g0630	K03650		-	gmx:100818096	836.639

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g2923	17	129017459	129020794	Ahy8g0630	8	12413812	12417043	hybridization