Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2923 ATGTTACGAGCCTCAGAAAAACCAAACGCAGTGATGGCGCACTTACCCGCCCTCCGGGTTCTCCTTCGCCACATTAACTGCCTCATTCCGCCACCGCGCACATCTATGCCTGCACTCTGTACCATCCGTGCCACGTGTCACTTCCTCCTTCTCTCCCCTAAACCTCGCAAACTCCACGCCACCGCAACTTCCAAAGGTCCAGAGAACCACGCGCTGCTGCTCAACAGAGACGAGCGCGTGGCGAGAAACGTTACTCCAAGCGACGTAGTTGAGAAAGGGAGCACAATCGCGGCGATAGTAACGTCGTTGGGAGGTCCACCTGGCGCCGTCGGAATCGTTCGACTCTCAGGTCCTTCTGCGGTTTCCGTGGCGGGTCGAGTGTTTCGACCCGCCAAAAGGAGCAAGAACAATGATTGGAAACCGATGAGCCACGTGGTGGAGTACGGAGTCGTTTTGGATTCGGAGGGAAATGTGATCGATGAGGTTTTGGCGGTGCCGATGCTGGCGCCAAAATCTTACACGCGCGAGGACGTTGTTGAGATTCAGTGTCATGGAAGTGAAGTGTGTCTGCGCCGAGTTCTCAGAACTTGCTTGGAAGCTGGAGCTACACTTGCTCAGCCAGGAGAGTTTACGCTTCGTGCGTTTCTAAATGGTCGGTTGGATCTATCACAAGCTGAGAATGTTGGAAGGTTGATTACCGCCAAGTCTGTGGCTGCTGCAGATGCAGCACTGGCCGGAATCCAGGGTGGTTTCTCCTCTCTTGTAAGATCGTTGAGAATGCAGTGCATTGAGTTGCTTACTGAGATTGAAGCTCGTTTAGATTTTGAGGATGAGATGCCTCCTTTGGATTTGAATATTATTATGGATAAAATTCATAGCATGTCGCAAGATGTTGAGAGTGCATTGGAGGCAGAAAATTACGACAGGCTTCTGCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTAAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTAATTGAAGCAAGTGTCAGTGTCAATGGTATCCCTATAACCCTTCTTGATACTGCAGGAATCAGGGACACTGATGATGTTGTGGAAAAGATTGGTGTAGAGAGATCAGAAGCTGTTGCTAGGGGTGCTGATCTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTAGAAAGGATTCAGTCTGCTAAGAGTTCAACTGGATCCTTGATCCCAGTAATACTTGCGGTCAACAAGATAGATTGCAATCCACGCGCTGAGACAGATTGGGACAGAGGATGTCAGAGTCATGATATCTTCAGTAAACGCGTGTTTACGTGTGCTGTTACCGGTCAAGGATTACAAGACCTAGAGAGGGCAGTACTAGAGCTTGTGGGACTTGATGCCATTCCTTCTGGGGGTCGCCAATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGAAAGGTTACAATCGTCAATAAAGGAGGAACTACCATTAGATTTTTGGACAATTGATTTGAGGGATGCTGCATTATCCCTTGGACAGATAAGTGGAGAAGATATATCTGAAGAAGTATTATCAAATATATTTGGGAAGTTCTGTATTGGTAAATAG 1692 0.4793 MLRASEKPNAVMAHLPALRVLLRHINCLIPPPRTSMPALCTIRATCHFLLLSPKPRKLHATATSKGPENHALLLNRDERVARNVTPSDVVEKGSTIAAIVTSLGGPPGAVGIVRLSGPSAVSVAGRVFRPAKRSKNNDWKPMSHVVEYGVVLDSEGNVIDEVLAVPMLAPKSYTREDVVEIQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRMQCIELLTEIEARLDFEDEMPPLDLNIIMDKIHSMSQDVESALEAENYDRLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDVVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKSSTGSLIPVILAVNKIDCNPRAETDWDRGCQSHDIFSKRVFTCAVTGQGLQDLERAVLELVGLDAIPSGGRQWTVNQRQCEQLVRTKEALERLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2923 563 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 108 563 IPR004520 GO:0003924|GO:0005525|GO:0006400
Ahy17g2923 563 Pfam 50S ribosome-binding GTPase 316 437 IPR006073 GO:0005525
Ahy17g2923 563 Gene3D - 315 491 IPR027417 -
Ahy17g2923 563 Pfam GTP-binding protein TrmE N-terminus 95 219 IPR018948 -
Ahy17g2923 563 PANTHER TRNA MODIFICATION GTPASE GTPBP3 93 563 - -
Ahy17g2923 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 479 IPR027417 -
Ahy17g2923 563 TIGRFAM small_GTP: small GTP-binding protein domain 315 442 IPR005225 GO:0005525
Ahy17g2923 563 Hamap tRNA modification GTPase MnmE [mnmE]. 94 563 IPR004520 GO:0003924|GO:0005525|GO:0006400
Ahy17g2923 563 Pfam MnmE helical domain 222 560 IPR025867 -
Ahy17g2923 563 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 314 484 IPR031168 -
Ahy17g2923 563 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 93 563 - -
Ahy17g2923 563 Gene3D tRNA modification GTPase MnmE domain 2 220 563 IPR027368 -
Ahy17g2923 563 Coils Coil 502 522 - -
Ahy17g2923 563 CDD trmE 312 484 IPR031168 -
Ahy17g2923 563 Gene3D Probable tRNA modification gtpase trme; domain 1 82 219 IPR027266 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2923 Ahy-Chr17 129017459 129020794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2923 K03650 - gmx:100818096 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2923 17 129017459 129020794 Ahy17g2923 17 129017459 129020794 ECH
Ahy17g2923 17 129017459 129020794 Ahy8g0630 8 12413812 12417043 hybridization