Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0154 ATGCTCTCAGTTCACTCTTGTGGATGTTGCCGTGTTTTCGCTGCAAGAGCAATCCAATTTCAAACCACACCTTCGCTCTTCTTCTCTACTCCGAACTATAAATCTCGTGTTGGCACTGCGCGAAGAGTCGCCGCTAGTTCTGGCTTCGCCGGAGACTCAGGCTCTGATTTGAGGCAGGAAACCATCGCCGATACAAGGACGAACTATGCCGGTGTTCGGCTGGAGGAGACGGTGGATAACGGAATCAGATCTGGAAAACTGAGACTCGATAGTTGGATCTCTTCTCGCATCAGCGGAATCAGTAGAGCTCGCGTTCAATCGAGCATCAGAGCTGGACTAGTTCAAGTCAATGGCCGCGTCGTTGATAAGGTTTCCTTCAATGTAAAAGCTGGGGATGAGATATCATGCACAATTTCTGAGTTGCAGACTTTGCGAGCTGTGCCAGAAAATATACCGTTGGATATAGTTTATGAAGATGAGCATGTGTTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGGAATACATCTGGAACATTAGTCAATGGCATTCTTCACCATTGTAACCTTCCGAATGTTGAATATTCTAAAGAGGAAGCTCTTTCAAATACTGAAGATTCTGACGATGAGTTTAATAGCTTCTATACTAATGCAAGTTCTTGTGAAGGATTATCTTCTAGGCCAGCTGTGGCATCCATTCGCCCAGGGATTGTACACAGATTGGATAAAGGCACAAGTGGGTTACTAGTTGTTGCAAAGGATGAACATTCTCATATGAAATTGTCGGAACAATTTAAGCTACGTACAATCAAGAGGGTGTATGTTAGCCTTACTGCAGGGCTACCCACTCCTGTTGCTGGGCGTGTTGAGGTTCCTGTTGGTCGTGATCCTAATAACCGGCTTCGTATGACTGCTGTAGCTGGACCACTCAATCCTAGAAAATCCCGGCATGCTGCTAGTAGGTACAAGGTAATTGAGATACTTGCCAGGGGTGGTTGTGCGTTGGTCGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCCAAGTACTTGGGAGTTCCTCTTCTGGGTGACGAGGTTTATGGAGCAACGAGGAGCATGGTCCTTTCACTGCTTCGTCCCAGGACACCCTCCGGTTTACATAGCAAAATTGTACAAATGGTTTCCAGAATAGATAGACCATGTCTTCATGCTTTGACTCTCGGGTTTAAGCATCCCCATACGGGGCAAGAGGTGCACTTTTCGTGCGAACCACCTGCAGACTTTGATGAGATTTTAAACCAACTTCGCAAGATTAGCAATGAGGGGGCTTTCTTCACAAAGCATTCAATTTCATAA 1362 0.4618 MLSVHSCGCCRVFAARAIQFQTTPSLFFSTPNYKSRVGTARRVAASSGFAGDSGSDLRQETIADTRTNYAGVRLEETVDNGIRSGKLRLDSWISSRISGISRARVQSSIRAGLVQVNGRVVDKVSFNVKAGDEISCTISELQTLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEYSKEEALSNTEDSDDEFNSFYTNASSCEGLSSRPAVASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYVSLTAGLPTPVAGRVEVPVGRDPNNRLRMTAVAGPLNPRKSRHAASRYKVIEILARGGCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGATRSMVLSLLRPRTPSGLHSKIVQMVSRIDRPCLHALTLGFKHPHTGQEVHFSCEPPADFDEILNQLRKISNEGAFFTKHSIS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0154 453 Pfam S4 domain 88 134 IPR002942 GO:0003723
Ahy8g0154 453 ProSiteProfiles S4 RNA-binding domain profile. 87 160 - -
Ahy8g0154 453 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 86 439 - -
Ahy8g0154 453 CDD PseudoU_synth_RluA_like 162 411 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy8g0154 453 Gene3D - 71 142 IPR036986 GO:0003723
Ahy8g0154 453 ProSitePatterns Rlu family of pseudouridine synthase signature. 242 256 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy8g0154 453 Gene3D Pseudouridine synthase 144 426 - -
Ahy8g0154 453 SUPERFAMILY Pseudouridine synthase 147 438 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy8g0154 453 Pfam RNA pseudouridylate synthase 161 356 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy8g0154 453 SUPERFAMILY Alpha-L RNA-binding motif 86 174 - -
Ahy8g0154 453 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 86 439 - -
Ahy8g0154 453 CDD S4 88 166 - -
Ahy8g0154 453 SMART s4_6 87 152 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0154 Ahy-Chr8 2878981 2883161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0154 K06180 - gmx:100810383 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2224 17 107286412 107289712 Ahy8g0154 8 2878981 2883161 hybridization