Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2224 ATGCTCTCAGTTCACTCTTGTGGATGTTGCCGTGTTTTCGCTGCAAGAGCAATCCAATTTCAAACCACACCTTCGCTCTTCTTCTCTACTCCGGACTATAAATCTCGTGTTGGCACTGCGCGAAGAGTTGCCGCTAGTTCTGGCTTCGCCGGAGACTCAGGCTCTGATTTGAGGCAGGAAACCATCGCCGATTCAAGGACGAACTATGCCGGTGTTCGGCTGGAGGAGACGGTGGATAACGGAATCAGATCTGGAAAACTGAGACTCGATAGTTGGATCTCTTCTCGCATCAGCGGAATCAGTAGAGCTCGCGTTCAATCGAGCATCAGAGCTGGACTAGTTCAAGTCAATGGCCGCGTCGTTGATAAGGTTTCCTTCAATGTAAAAGCTGGGGATGAGATATCATGCACAATTGCTGAGTTGCAGACTTTGCGAGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTGTTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGAAATACATCTGGAACATTAGTCAATGGCATTCTTCACCATTGTAACCTTCCGAATGTTGAATATTCTAAAGAGGAAGCTCTTTCAAATACTGAAGATTCTGACGATGAGTTCAATAGCTTCTATACTAATGATGAACATTCTCATATGAAATTGTCGGAACAGTTTAAGCTACGTACAATCAAGAGGGTGTATGTTAGCCTTACTGCAGGGCTACCCACTCCTGTTGCTGGGCGTGTTGAGGTTCCTGTTGGTCGTGATCCTAATAATCGGCTTCGTATGACTGCTGTAGCTGGACCACTCAATCCTAGAAAATCCCGGCATGCTGCTAGTAGGTACAAGGTAATTGAGATACTTGCCAGGGGTGGTTGTGCGTTGGTCGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCCAAGTACTTGGGAGTTCCTCTTCTGGGTGACGAGGTTTATGGAGCAACGAGGAGCATGGTCCTGTCACTGCTTCGTCCCAGGACACCCTCCGGTTTACATAGCAAAATTGTACAAATGGTTTCCAGAATAGATAGACCATGTCTTCATGCTTTGACTCTCGGGTTTAAGCATCCCCATACGGGGCAAGAGGTGCACTTTTCGTGCGAACCACCTGCAGACTTTGATGAGATTTTAAACCAACTTCGCAAGATTAGCAATGAGGGGGCTTTCTTCACAAAGCATTCAATTTCATAA 1254 0.4625 MLSVHSCGCCRVFAARAIQFQTTPSLFFSTPDYKSRVGTARRVAASSGFAGDSGSDLRQETIADSRTNYAGVRLEETVDNGIRSGKLRLDSWISSRISGISRARVQSSIRAGLVQVNGRVVDKVSFNVKAGDEISCTIAELQTLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEYSKEEALSNTEDSDDEFNSFYTNDEHSHMKLSEQFKLRTIKRVYVSLTAGLPTPVAGRVEVPVGRDPNNRLRMTAVAGPLNPRKSRHAASRYKVIEILARGGCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGATRSMVLSLLRPRTPSGLHSKIVQMVSRIDRPCLHALTLGFKHPHTGQEVHFSCEPPADFDEILNQLRKISNEGAFFTKHSIS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2224 417 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 86 403 - -
Ahy17g2224 417 ProSiteProfiles S4 RNA-binding domain profile. 87 160 - -
Ahy17g2224 417 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 87 402 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy17g2224 417 SMART s4_6 87 152 IPR002942 GO:0003723
Ahy17g2224 417 Pfam RNA pseudouridylate synthase 219 320 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy17g2224 417 Pfam S4 domain 88 134 IPR002942 GO:0003723
Ahy17g2224 417 Gene3D - 71 142 IPR036986 GO:0003723
Ahy17g2224 417 CDD S4 88 166 - -
Ahy17g2224 417 SUPERFAMILY Alpha-L RNA-binding motif 86 174 - -
Ahy17g2224 417 SUPERFAMILY Pseudouridine synthase 147 402 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy17g2224 417 Gene3D Pseudouridine synthase 144 390 - -
Ahy17g2224 417 CDD PseudoU_synth_RluA_like 162 375 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy17g2224 417 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 86 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2224 Ahy-Chr17 107286412 107289712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2224 K06180 - gmx:100810383 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2224 17 107286412 107289712 Ahy17g2224 17 107286412 107289712 ECH
Ahy17g2224 17 107286412 107289712 Ahy8g0154 8 2878981 2883161 hybridization