Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0102 ATGAGCAAGAAGGCGACAGCAGCACCTGATCCGGTGGCGGTGCTACGGGGCCACCGTGCTTCCGTGACGGACATTTGTTTTCATCCCTCTGATCGCATTCTCTTCTCTGGTTCTGTTGACGGTGAAGTTCGCATTTGGGATACCCTTCAGCATCGAACTCTCTCTTCTTCTTGGATACACAGTGCTGCCCACGGGATTGTTGCTGTCGCCACTAGTGCTTCCCTTGGAACCAATAAATTCGTTAGCCAGGGTAGGGATGGAACTGTTAAAGTTTGGGACTTTGTTCATGCTGCTTTGTCTAGGAGTCCACTGCTTACCATCAAGACCAACACTTATCACTTTTGCAAGCTTTCCACTGTCAAGAATCCTAAATGTTTCCCTACAAAAGAACTAGGGCGACGATCTCATATAGAAATTCTTGACGATAGAAGTTCTTCTCAAAGTTTCGAAGAAAATATGTATGCTGACGGGCTACAGTATGTGGCTTTAGCAGGGGAGAACCCGTCTGAGGTCGAAATTTGGGATCTCAAATCAGCTGAAAGATTTGTACGACTCCCTTCAAGCAACCCTAGTAGCTCTTCAGTTTGCAACAAAGACAGAGGGATGTGCATGGCACTTCAATTGTTTTTACCATCTGAATCACAGGGATCTCTAAATGTCTTGGCCGGTTATGAGGATGGCTCCATGCTTTGGTGGGATGTACGAAATCCTGGAGTTCCAGTAACCACTGTAAAGCTCCATTCTGAACCAGTTTTGAGCATCTGTATTGATGGGTCATGCAGTGGGGGCATCTCAGGAGCTGCAGATGACAAGATTGTAATGTATAGCTTGGACCACTCTTCGGGTATATGTGTAATCAAGAAAGAAATCAATTTGGAGCGACCTGGCATATCAGGCACTTCAATTCGTGCTGATGAAAAAATTGCTGCAACTGCCGGTTGGGACCACAGAGTAAGGATATATAATTACCACAAAGGAAATGCTTTAGCAATACTGAAGTATCACCATGCAACGTGCAATGCTGTAACTTACTCATATGATTGTAAGCTTATGGCCTCTGCCTCCGAAGACACAACGGTGGGGCTTTGGGAATTATATCCTCCTCGAACATGA 1113 0.4555 MSKKATAAPDPVAVLRGHRASVTDICFHPSDRILFSGSVDGEVRIWDTLQHRTLSSSWIHSAAHGIVAVATSASLGTNKFVSQGRDGTVKVWDFVHAALSRSPLLTIKTNTYHFCKLSTVKNPKCFPTKELGRRSHIEILDDRSSSQSFEENMYADGLQYVALAGENPSEVEIWDLKSAERFVRLPSSNPSSSSVCNKDRGMCMALQLFLPSESQGSLNVLAGYEDGSMLWWDVRNPGVPVTTVKLHSEPVLSICIDGSCSGGISGAADDKIVMYSLDHSSGICVIKKEINLERPGISGTSIRADEKIAATAGWDHRVRIYNYHKGNALAILKYHHATCNAVTYSYDCKLMASASEDTTVGLWELYPPRT* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0102 370 SUPERFAMILY WD40 repeat-like 11 364 IPR036322 GO:0005515
Ahy8g0102 370 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Ahy8g0102 370 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Ahy8g0102 370 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Ahy8g0102 370 Pfam WD domain, G-beta repeat 11 47 IPR001680 GO:0005515
Ahy8g0102 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 370 - -
Ahy8g0102 370 ProSitePatterns Trp-Asp (WD) repeats signature. 351 365 IPR019775 -
Ahy8g0102 370 PANTHER TRANSDUCIN BETA-LIKE 3 5 370 - -
Ahy8g0102 370 Gene3D - 6 208 IPR015943 GO:0005515
Ahy8g0102 370 SMART WD40_4 283 322 IPR001680 GO:0005515
Ahy8g0102 370 SMART WD40_4 325 364 IPR001680 GO:0005515
Ahy8g0102 370 SMART WD40_4 51 93 IPR001680 GO:0005515
Ahy8g0102 370 SMART WD40_4 8 47 IPR001680 GO:0005515
Ahy8g0102 370 SMART WD40_4 237 276 IPR001680 GO:0005515
Ahy8g0102 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 56 IPR001680 GO:0005515
Ahy8g0102 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 370 IPR001680 GO:0005515
Ahy8g0102 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 47 - -
Ahy8g0102 370 Gene3D - 209 369 IPR015943 GO:0005515
Ahy8g0102 370 PANTHER - 5 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0102 Ahy-Chr8 1872101 1878703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0102 12 99 Miscellaneous Gene Families AT5G08390 29.545 3.04e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0102 K24770 - gmx:100800482 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2314 17 111505891 111512112 Ahy8g0102 8 1872101 1878703 hybridization