Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2314 ATGTTCAGAACGTGTGAAAGTCTCAGATGGATTGTACAGCCTCCCATCCCAGGGATTACATCACAAACTCGAACGCTGTATTTGGTCTTTCTCTATAAACAGCAAAAACATCCCAGTGGCAGAATGAGCAAGAAGGCGACAGCAGCACCTGATCCGGTGGCGGTGCTACGGGGCCACCGTGCTTCCGTGACGGACATTTGTTTTCATCCCTCTGATCGCATTCTCTTCTCTGGTTCTGTTGACGGTGAAGTTCGCATTTGGGATACCCTTCAGCATCGAACTCTCTCTTCTTCTTGGATACACAGTGCTGCCCACGGGATTGTTGCTGTCACCACTAGTGCTTCCCTTGGAACCAATAAACTCGTTAGCCAGGGTAGGGATGGAACTGTTAAAGTTTGGGACTTTGCTCATGCTGCTTTGTCTAGGAGTCCACTGCTTACCATCAATACCAACACTTATCACTTTTGCAAGCTTTCCACTGTCAAGTATCCTAAATGTTTCCCTACAAAAGAACTAGGGCGACCTTCTCATATAGAAATTCTTGACGATAGAAGTTCTTCTCAAAGCTCTGAAGAAAATATGTATGCTGACGGGCTACAGTATGTGGCTTTAGCAGGGGAGAACCCTTCTGAGGTCGAAATTTGGGATCTCAAATCAGCTGAAAGATTTGTACGACTCCCTTCAAGCAACCCTAGTAGCTCTTCAGTTTGCAACAAAGATAGAGGGATGTGCATGGCACTTCAATTGTTTTTACCATCTGAATCACAGGGATCTCTAAATGTCTTGGCCGGTTATGAGGATGGTTCCATGCTTTGGTGGGATGTACGAAATCCTGGAGTTCCAGTAACCGCTGTAAAGCTCCATTCTGAACCAGTTTTGAGCATCTGTATTGATGGGTCATGCAGTGGGGGCATCTCAGGAGCTGCAGATGACAAGATTGTAATGTATAGCTTGGACCACTCTTCGGGTATATGTGTAATCAAGAAAGAAATCAATTTGGAGCGACCTGGCATATCAGGCACTTCAATTCGTCCTGATGAAAAAATTGCTGCAACTGCCGGTTGGGACCACAGAGTAAGGATATATAATTACCGCAAAGGAAATGCTTTAGCAATACTAAAGTATCACCATGCAACGTGCAATGCTGTAACTTACTCATATGATTGTAAGCTTATGGCCTCTGCCTCCGAAGACACAACGGTGGGGCTTTGGGAATTATATCCTCCTCGAACATGA 1236 0.4531 MFRTCESLRWIVQPPIPGITSQTRTLYLVFLYKQQKHPSGRMSKKATAAPDPVAVLRGHRASVTDICFHPSDRILFSGSVDGEVRIWDTLQHRTLSSSWIHSAAHGIVAVTTSASLGTNKLVSQGRDGTVKVWDFAHAALSRSPLLTINTNTYHFCKLSTVKYPKCFPTKELGRPSHIEILDDRSSSQSSEENMYADGLQYVALAGENPSEVEIWDLKSAERFVRLPSSNPSSSSVCNKDRGMCMALQLFLPSESQGSLNVLAGYEDGSMLWWDVRNPGVPVTAVKLHSEPVLSICIDGSCSGGISGAADDKIVMYSLDHSSGICVIKKEINLERPGISGTSIRPDEKIAATAGWDHRVRIYNYRKGNALAILKYHHATCNAVTYSYDCKLMASASEDTTVGLWELYPPRT* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2314 411 Gene3D - 186 408 IPR015943 GO:0005515
Ahy17g2314 411 ProSitePatterns Trp-Asp (WD) repeats signature. 392 406 IPR019775 -
Ahy17g2314 411 SMART WD40_4 278 317 IPR001680 GO:0005515
Ahy17g2314 411 SMART WD40_4 49 88 IPR001680 GO:0005515
Ahy17g2314 411 SMART WD40_4 92 134 IPR001680 GO:0005515
Ahy17g2314 411 SMART WD40_4 324 363 IPR001680 GO:0005515
Ahy17g2314 411 SMART WD40_4 366 405 IPR001680 GO:0005515
Ahy17g2314 411 PANTHER - 39 411 - -
Ahy17g2314 411 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Ahy17g2314 411 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Ahy17g2314 411 PRINTS G protein beta WD-40 repeat signature 75 89 IPR020472 -
Ahy17g2314 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 411 IPR001680 GO:0005515
Ahy17g2314 411 Gene3D - 29 150 IPR015943 GO:0005515
Ahy17g2314 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Ahy17g2314 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 143 IPR001680 GO:0005515
Ahy17g2314 411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 88 - -
Ahy17g2314 411 SUPERFAMILY WD40 repeat-like 51 405 IPR036322 GO:0005515
Ahy17g2314 411 Pfam WD domain, G-beta repeat 52 88 IPR001680 GO:0005515
Ahy17g2314 411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 411 - -
Ahy17g2314 411 PANTHER TRANSDUCIN BETA-LIKE 3 39 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2314 Ahy-Chr17 111505891 111512112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2314 53 140 Miscellaneous Gene Families AT5G08390 30.682 6.28e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2314 K24770 - gmx:100800482 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2314 17 111505891 111512112 Ahy17g2314 17 111505891 111512112 ECH
Ahy17g2314 17 111505891 111512112 Ahy8g0102 8 1872101 1878703 hybridization