Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2416 ATGTTCGGAGGTATAGTGATGAATCATTCCATCAGAACCAAGCTTTCACGTGCAATTACCAACTTAGCCCTCCAACTCCCTTCTTATACCTCCGAACGCAGACTAGCAGAACAAACCTGCTTGACCCTCCTTCATTCTTGCAACACTCTCACCAACCTCATACAAATCCACACCATCATCCTCAAATTGGGTCTCCATAACAACCCTCTTGTTCTCACCAAGTTCGCTTCAACATCTTCTGATCTCAATGCCATTCACTATGCTTCTTCATTCCTATTCTCCCCCTCTAATAATAATAACAATCTCTTATTGTATGATGCATTCTTGTTTAACACTGTTATCAGGGCTTATGCTCAAACGGCTGGCTCAAAGTTTAAGGCTCTGGAGTTTTACAAAACCATGTTTAGCTATGGCGTTTTGCCAAATAAGTTCACGTACCCTTTTGTGCTCAAGGCGTGTGCTGGCATTGGTGACTTGAATTTGGGGGAAATGGTTCATGGATCTTTGGTGAAGTTTGGTTTTGATGATGATCGTCATGTACAGAACACTATGATTCACATGTATTGTTGTTGTGGGGAAGGGGTTGAGTTTGCTCGGAAGGTGTTTGATGAAAGTCCCAAGATGGATTCCGTTACTTGGAGTGCTATGATTGGTGGATATGCGCGTCTCGGGCGGTCTATGGAAGCTGTTGGATTGTTTAGGGAAATGCAGGTTAAGGGTGTTGTATCTGACGATGTCACCATTGTTTGTGTGTTGTCTGCTTGTACCGATTTGGGTGCACTTGAGCTTGGGAAGTGGTTAGAGTCTTATCTTGAGAGGAAGAAAATACCAAAGTCAGTGGAGCTCTGCAATGCTTTGATAGACATGTTTGCAAAGTGTGGTGATGTTGACAAAGCTCTGGAACTGTTTAGACAAATGAGTTTTCGCACTATAGTTTCATGGACTTCGGTGATTGTTGGTTTGGCAATGCATGGCCGTGGCTTAGAGGCTGTTTCGTTGTTTGATATGATGATTGAGCAAAGGGTGGCACCTGATGATGTTGCATTTATTGGGGTCCTCTCTGCTTGTAGCCACTCCGGGCTGGTCAATAAAGGACATTACTATTTCAATTCAATGGAGAAGAACTTCAGCATTGTGCCAAAGATTGAACATTATGGATGTATGGTGGATCTGTTAAGTAGAGCTGGACTTGTCAAGGAGGCTTTGGAATTTGTTCAAAAAATGCCTATTAACCCAAACCAAATCATCTGGAGAAGCATAATCACTGCTTGTCATGCTCGTGGTGAGTTCAAGCTTGGAGAGAGCATCTCAAAAAAACTTATCAGAAGTGAGCCAATGCAAGAGTCTAACTATGTACTGCTTTCAAACATTTACGCAAAATTGCTTCGCTGGGAGAAAAAGACCAAGGTTAGAGAGATGATGGATTTGAAAGGGATGAAGAAGATCCCAGGAAGCACCATGATTGAACTGAATAATGAGATGTATGAGTTTGTCGCTGGAGATAAGTCACATAATCAGTCGAAACAAATATATGAAATGATGGACGAGATGGGAAGGGAGATAAAGAGGGCTGGCTATGTGCCTACAACCTCACAGGTATTGCTTGACATTGATGAAGAAGACAAAGAAGATGCTTTGTATAGACACAGTGAAAAAATTGCCATAGCTTTTTCTCTTTTGAATACACCCCCTGGCACACCCATTAGACTCGTGAAAAACTTGCGTGTCTGTGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAGGTTTATAACAGAGAGATTGTGGTGAGAGACCGCAATCGGTTCCACCATTTCAAGAATGGTGTGTGCTCCTGTAAAGACTTCTGGTGA 1854 0.4229 MFGGIVMNHSIRTKLSRAITNLALQLPSYTSERRLAEQTCLTLLHSCNTLTNLIQIHTIILKLGLHNNPLVLTKFASTSSDLNAIHYASSFLFSPSNNNNNLLLYDAFLFNTVIRAYAQTAGSKFKALEFYKTMFSYGVLPNKFTYPFVLKACAGIGDLNLGEMVHGSLVKFGFDDDRHVQNTMIHMYCCCGEGVEFARKVFDESPKMDSVTWSAMIGGYARLGRSMEAVGLFREMQVKGVVSDDVTIVCVLSACTDLGALELGKWLESYLERKKIPKSVELCNALIDMFAKCGDVDKALELFRQMSFRTIVSWTSVIVGLAMHGRGLEAVSLFDMMIEQRVAPDDVAFIGVLSACSHSGLVNKGHYYFNSMEKNFSIVPKIEHYGCMVDLLSRAGLVKEALEFVQKMPINPNQIIWRSIITACHARGEFKLGESISKKLIRSEPMQESNYVLLSNIYAKLLRWEKKTKVREMMDLKGMKKIPGSTMIELNNEMYEFVAGDKSHNQSKQIYEMMDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKIAIAFSLLNTPPGTPIRLVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGVCSCKDFW* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2416 617 Gene3D Tetratricopeptide repeat domain 97 161 IPR011990 GO:0005515
Ahy6g2416 617 Gene3D Tetratricopeptide repeat domain 162 261 IPR011990 GO:0005515
Ahy6g2416 617 Gene3D Tetratricopeptide repeat domain 262 372 IPR011990 GO:0005515
Ahy6g2416 617 Pfam E+ motif 495 521 IPR046849 -
Ahy6g2416 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Ahy6g2416 617 Pfam PPR repeat family 209 255 IPR002885 -
Ahy6g2416 617 Pfam DYW family of nucleic acid deaminases 525 617 IPR032867 GO:0008270
Ahy6g2416 617 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 603 - -
Ahy6g2416 617 Pfam PPR repeat 283 306 IPR002885 -
Ahy6g2416 617 Pfam PPR repeat 384 408 IPR002885 -
Ahy6g2416 617 Pfam PPR repeat 312 340 IPR002885 -
Ahy6g2416 617 TIGRFAM PPR: pentatricopeptide repeat domain 282 307 IPR002885 -
Ahy6g2416 617 TIGRFAM PPR: pentatricopeptide repeat domain 211 244 IPR002885 -
Ahy6g2416 617 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Ahy6g2416 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Ahy6g2416 617 PANTHER - 38 603 - -
Ahy6g2416 617 Pfam E motif 431 489 IPR046848 -
Ahy6g2416 617 Gene3D Tetratricopeptide repeat domain 373 544 IPR011990 GO:0005515
Ahy6g2416 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 141 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2416 Ahy-Chr6 108580425 108582729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2416 110 617 Glycoside Hydrolase AT3G49170 38.207 7.77e-126 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2416 - - lang:109350726 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3106 16 146901162 146904790 Ahy6g2416 6 108580425 108582729 hybridization