Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3106 ATGAATCATTCCATCAGAACCAAGCTTTCACGTGCAATTACCAACTTAGCCCTCCAACTCCCTTCCTATACCTCCGAACGCAGACTAGCAGAACAAACCTGCTTGACCCTCCTTCATTCTTGCAACACTCTCACCAACCTCACACAAATCCACACCATCATCCTCAAATTGGGTCTCCATAACAACCCTCTTGTTCTCACCAAGTTCGCTTCAACATCTTCAGATCTCAATGCCATTCACTATGCTGCTTCATTCCTATTCTCCCCCTCTAATAATAATAACAATCTCTTACTGTATGATGCATTCTTGTTTAACACTGTTATCAGGGCTTATGCTCAAACGGCTGGCTCAAAGTTTAAGGCTTTGGAGTTTTACAAAACCATGTTTAGCTATGGCGTTTTGCCAAATAAGTTCACGTACCCTTTTGTGCTCAAGGCGTGTGCTGGCATTGGTGACTTGAATTTGGGGGAAATGGTTCATGGATCTTTGGTGAAGTTTGGTTTTGATGATGATCGTCATGTACAGAACACTATGATTCACATGTATTGTTGTTGTGGGGAAGGGGTTGAGTTTGCTCGGAAGGTGTTTGATGAAAGTCCCAAGATGGATTCCGTTACTTGGAGTGCTATGATTGGTGGATATGCGCGTCTGGGGCGGTCTATGGAAGCTGTTGGATTGTTTAGGGAAATGCAGGTTAAGGGTGTTGTATCTGACGATGTCACCATTGTTTGTGTGTTGTCTGCTTGTACCGATTTGGGTGCACTTGAGCTTGGGAAGTGGTTAGAGTCTTATGTTGAGAGGAAGAAAATACCAAAGTCAGTGGAGCTCTGCAATGCTTTGATAGACATGTTTGCAAAATGTGGTGATGTTGACAAAGCTCTGGAACTGTTTAGACAAATGAGTTTTCGCACTATAGTTTCATGGACTTCGGTGATTGTTGGTTTGGCAATGCATGGCCGCGGCTTAGAGGCTGTTTCGTTGTTTGATATGATGATTGAGCAAAGGGTGGCACCTGATGATGTTGCATTTATTGGGGTCCTCTCTGCTTGTAGCCACTCCGGGCTGGTCAATAAAGGACATTACTATTTCAATTCAATGGAGAAGAACTTCAGCATTGTGCCAAAGATTGAACATTATGGATGTATGGTGGATCTGTTAAGTAGAGCTGGACTTGTCAAGGAGGCTTTGGAATTTGTTCAAAAAATGCCTATTAACCCAAACCAAATCATCTGGAGAAGCATAATCACTGCTTGTCATGCTCGGGGTGAGTTCAAGCTTGGAGAGAGCATCTCAAAAAAACTTATCAGAAGCGAGCCAATGCAAGAGTCTAACTATGTACTGCTTTCAAACATTTACGCAAAATTGCTTCGCTGGGAGAAAAAGACCAAGGTTAGAGAGATGATGGATTTGAAAGGGATGAAGAAGATCCCAGGAAGCACCATGATTGAACTGAATAATGAGATGTATGAGTTTGTTGCTGGAGATAAGTCACATAATCAGTCGAAACAAATATACGAAATGATGGACGAGATGGGAAGGGAGATAAAGAGGGCTGGCTATGTGCCTACAACCTCACAGGTATTGCTTGACATTGATGAAGAAGACAAAGAAGATGCTTTGTATAGACACAGTGAAAAAATTGCCATAGCTTTTTCTCTTTTGAATACACCCCCTGGCACACCCATTAGACTCGTGAAAAACTTGCGTGTCTGTGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAGGTTTATAACAGAGAGATTGTGGTGAGGGACCGCAATCGGTTCCACCATTTCAAGAATGGCGTGTGCTCCTGTAAAGACTTCTGGTGA 1836 0.4265 MNHSIRTKLSRAITNLALQLPSYTSERRLAEQTCLTLLHSCNTLTNLTQIHTIILKLGLHNNPLVLTKFASTSSDLNAIHYAASFLFSPSNNNNNLLLYDAFLFNTVIRAYAQTAGSKFKALEFYKTMFSYGVLPNKFTYPFVLKACAGIGDLNLGEMVHGSLVKFGFDDDRHVQNTMIHMYCCCGEGVEFARKVFDESPKMDSVTWSAMIGGYARLGRSMEAVGLFREMQVKGVVSDDVTIVCVLSACTDLGALELGKWLESYVERKKIPKSVELCNALIDMFAKCGDVDKALELFRQMSFRTIVSWTSVIVGLAMHGRGLEAVSLFDMMIEQRVAPDDVAFIGVLSACSHSGLVNKGHYYFNSMEKNFSIVPKIEHYGCMVDLLSRAGLVKEALEFVQKMPINPNQIIWRSIITACHARGEFKLGESISKKLIRSEPMQESNYVLLSNIYAKLLRWEKKTKVREMMDLKGMKKIPGSTMIELNNEMYEFVAGDKSHNQSKQIYEMMDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKIAIAFSLLNTPPGTPIRLVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGVCSCKDFW* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3106 611 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Ahy16g3106 611 TIGRFAM PPR: pentatricopeptide repeat domain 205 238 IPR002885 -
Ahy16g3106 611 TIGRFAM PPR: pentatricopeptide repeat domain 276 301 IPR002885 -
Ahy16g3106 611 PANTHER - 32 597 - -
Ahy16g3106 611 Pfam DYW family of nucleic acid deaminases 519 611 IPR032867 GO:0008270
Ahy16g3106 611 Pfam PPR repeat 306 334 IPR002885 -
Ahy16g3106 611 Pfam PPR repeat 277 300 IPR002885 -
Ahy16g3106 611 Pfam PPR repeat 378 402 IPR002885 -
Ahy16g3106 611 Pfam E+ motif 489 515 IPR046849 -
Ahy16g3106 611 Gene3D Tetratricopeptide repeat domain 154 256 IPR011990 GO:0005515
Ahy16g3106 611 Gene3D Tetratricopeptide repeat domain 92 153 IPR011990 GO:0005515
Ahy16g3106 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Ahy16g3106 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Ahy16g3106 611 Pfam PPR repeat family 203 249 IPR002885 -
Ahy16g3106 611 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 597 - -
Ahy16g3106 611 Gene3D Tetratricopeptide repeat domain 257 366 IPR011990 GO:0005515
Ahy16g3106 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 135 IPR002885 -
Ahy16g3106 611 Pfam E motif 425 483 IPR046848 -
Ahy16g3106 611 Gene3D Tetratricopeptide repeat domain 367 542 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3106 Ahy-Chr16 146901162 146904790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3106 33 611 Glycoside Hydrolase AT3G49170 35.654 7.62e-127 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3106 - - lang:109350726 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3106 16 146901162 146904790 Ahy16g3106 16 146901162 146904790 ECH
Ahy16g3106 16 146901162 146904790 Ahy6g2416 6 108580425 108582729 hybridization