LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g1480	ATGCCTGCAACTCCATTTTCGTGCTCGTACCTCATCCTTCAGCCACGCTTCAACTCCTACTTCAACCCTCTCTTCCGTTCCTTCACCTACCAGCTCTCTACTTCACCGCTCTCCTTCAATGGAATCAAGTTCACCGCCGCCAGAGTCCACTCTTCACTCTCGCCGGCGGCGGAGACCGACTCTCAGAGCGGCGGTGGCGGAAGATCTGGAGCTTTATCTCCCGGTCCTATAGTCGCTGGAGAGGTGCAGAGGATCGACGTGAACCCTCCCAAGGGGACGCGTGATTTCCCGCCTGAGGAAATGCGCTTGCGCAACTGGCTCTTCAACAATTTCAAAGAGGTTTCGCGTTTATATGGATTTGAGGAGGTTGATTTTCCTGTGCTTGAGAATGAGGCATTGTTCACTAGGAAAGCAGGGGAGGAGATTAAGGACCAGCTTTATTGTTTCGAAGACCGGGGTAATCGTCGTGTTGCACTGAGGCCAGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGCAAGTCTGTACCACTGCCATTGAAGTGGTTCACTGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGGCGCCGTCGTGAGCATTACCAGTGGAATATGGACATCATTGGTGTTCCTGGTGTTATGGCTGAAGCAGAGCTTATATCGTCTATCGTCACTTTATTCAAGCGAATAGGAATTAAAGAATCCGATGTTGGGTTTAAAGTTTCCAGCCGAAAGGTTCTACAGGAAGTATTGAAGTGTTATTCCATACCTGAAAGTTTATTTGGCAAGGTCTGCGTCATTATTGACAAAATCGAGAAAATTCCAGTTGATGAGGTAAAGAAAGAGTTGATGGCTGCTGGTGTATCACAAGAGGCTGTCGAGGAGCTTTTGCAAGTCCTTTCTGTAAAGTCATTGACAGGGTTAGAAGAGAAGCTTGGAAGCAGTGGGAAAGCAATTGCTGACCTGAAACAGTTGTTTTCACTTGCTGAAAAATTTGGTTACTCTGAATGGATTCAATTTGATGCATCAGTTGTTCGAGGCCTTGCTTACTACACTGGCATTGTATTCGAGGGTTTTGATCGAGAAGGAAAGCTGCGAGCTATTTGCGGTGGTGGTCGTTATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTCCTGCCTGTGGTTTTGGATTTGGTGATGCAGTTGTAGTGGAAATACCCTTGTCCTCCTTGCTCTTTAAACAGTTACTTAGAGAAAAGGGTCTGCTACCAGATCTCAGCTTACAAATGGATTACATTGTATGTGCCTTGGATGAAGATCTTCAAGGTGCTGCTGCTATGGTTGCTCATGTTCTCAGAAAAAAGGGACAGAGTGTTGACTTAGTTTTGGAAAGCAAACCTCTTAAGTGGGTTTTTAAGCGAGCTGCCCGAAATAATGCTCAGCGGCTTGTATTAGTGGGGAGCTCTGAGTGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTTGCTACTGGTGAACAGTACGAGGTTAAGCTGGATGAACTGATATAA	1545	0.4641	MPATPFSCSYLILQPRFNSYFNPLFRSFTYQLSTSPLSFNGIKFTAARVHSSLSPAAETDSQSGGGGRSGALSPGPIVAGEVQRIDVNPPKGTRDFPPEEMRLRNWLFNNFKEVSRLYGFEEVDFPVLENEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVPLPLKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTLFKRIGIKESDVGFKVSSRKVLQEVLKCYSIPESLFGKVCVIIDKIEKIPVDEVKKELMAAGVSQEAVEELLQVLSVKSLTGLEEKLGSSGKAIADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDHLFSTFGADDIPACGFGFGDAVVVEIPLSSLLFKQLLREKGLLPDLSLQMDYIVCALDEDLQGAAAMVAHVLRKKGQSVDLVLESKPLKWVFKRAARNNAQRLVLVGSSEWQRGVVGVKILATGEQYEVKLDELI*	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g1480	514	PIRSF	His-tRNA_synth	83	514	IPR004516	GO:0005737
	Ahy6g1480	514	Pfam	Histidyl-tRNA synthetase	92	396	IPR041715	-
	Ahy6g1480	514	PANTHER	HISTIDYL-TRNA SYNTHETASE	83	513	IPR004516	GO:0005737
	Ahy6g1480	514	Gene3D	Bira Bifunctional Protein; Domain 2	83	407	IPR045864	-
	Ahy6g1480	514	MobiDBLite	consensus disorder prediction	55	75	-	-
	Ahy6g1480	514	Coils	Coil	510	514	-	-
	Ahy6g1480	514	TIGRFAM	hisS: histidine--tRNA ligase	89	509	IPR015807	GO:0004821\|GO:0005524\|GO:0006427
	Ahy6g1480	514	Pfam	Anticodon binding domain	433	514	IPR004154	-
	Ahy6g1480	514	CDD	HisRS-like_core	100	405	IPR041715	-
	Ahy6g1480	514	SUPERFAMILY	Class II aaRS and biotin synthetases	89	402	IPR045864	-
	Ahy6g1480	514	ProSiteProfiles	Aminoacyl-transfer RNA synthetases class-II family profile.	92	423	IPR006195	-
	Ahy6g1480	514	SUPERFAMILY	Class II aaRS ABD-related	429	514	-	-
	Ahy6g1480	514	PANTHER	HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED	83	513	-	-
	Ahy6g1480	514	Hamap	Histidine--tRNA ligase [hisS].	85	514	IPR015807	GO:0004821\|GO:0005524\|GO:0006427
	Ahy6g1480	514	Gene3D	-	422	514	IPR036621	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g1480	Ahy-Chr6	39326723	39333361	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy6g1480	K01892		-	gmx:100793186	858.211

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g1650	16	49712419	49723915	Ahy6g1480	6	39326723	39333361	hybridization