Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1650 ATGCCTGCAACTCCATTTTCGTCGTGCTCGTACCTCATCCTTCAGCCACGCTTCAACTCCTACTTCAACCCTCTCTTCCGTTCCTTCACCTACCAGCTCTCTACTTCACTGCTCTCCTTCAATGGAATCAAGTTCACCGCCGCCAGAATCCACTCTTCACTCTCGCCGGCGGCGGAGACCGAGTCTCAGAGCGGCGGTGGCGGAAGGTCTGGAGCTTTATCTCCCGGTCCTATAGTCGCTGGAGAGGTGCAGAGGATCGACGTGAACCCTCCCAAGGGGACGCGTGATTTCCCCCCCGAGGAAATGCGCTTGCGCAACTGGCTCTTCAACAATTTCAAAGAGGTTTCGCGGTTATATGGATTTGAGGAGGTTGATTTTCCTGTTCTTGAGAATGAGGCATTGTTCACTAGGAAAGCAGGGGAGGAGATTAAGGACCAGCTTTATTGTTTTGAAGACCGGGGTAATCGTCGTGTTGCACTGAGGCCAGAACTTACTCCGTCTTTGGCAAGGCTGGTGATACAGAAAGGCAAGTCTGTACCACTGCCATTGAAGTGGTTCACTGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGGCGCCGTCGTGAGCATTACCAGTGGAATATGGACATCATTGGTGTTCCTGGTGTTATGGCTGAAGCAGAGCTTATATCGTCTATCGTCTCTTTATTCAAGCGAATAGGAATTAAAGACTCCGATGTCGGGTTTAAAGTTTCCAGCCGAAAGGTTCTACAGGAAGTATTGAAGTGTTATTCCATACCTGAGAGTTTATTTGGCAAGGTCTGCGTCATTATTGACAAAATCGAGAAAATTCCAGTTGATGAGGTAAAGAAAGAGTTGATGGCCGCTGGTGTATCACAAGAGGCTGTCCAGGAGCTTTTGCAAGTCCTTTCTGTAAAGTCATTGACAGAGTTAGAAGAGAAGCTTGGAAGCAGTGGGGAAGCAATTGCTGATCTGAAACAGTTGTTTTCACTTGCTGAAAAATTTGGTTACTCTGAATGGATTCAATTTGATGCATCAGTTGTTCGAGGCCTAGCTTACTACACTGGCATTGTATTCGAGGGTTTTGATCGAGAAGGAAAGCTGCGAGCTATTTGTGGTGGTGGTCGTTATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTCCTGCCTGTGGTTTTGGATTTGGTGATGCAGTTGTAGTGGAATTACTTAGAGAAAAGGGTCTGCTACCGGATCTCAGCTTACAAATGGATTACATTGTATGTGCCTTGGATGAAGATCTTCAAGGTTCTGCTGCTATGGTTGCTCATGTTCTCAGAAAAAAGGGACAGAGTGTTGACTTAGTTTTGGAAAGCAAACCTCTTAAGTGGGTTTTTAAGCGAGCTGCCCGAAATAATGCTCAGCGGCTTGTATTAGTGGGGAGCTCTGAGTGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTTGCTACTGGTGAACAGTACGAGGTTAAGCTGGATGAACTGATATAA 1518 0.4664 MPATPFSSCSYLILQPRFNSYFNPLFRSFTYQLSTSLLSFNGIKFTAARIHSSLSPAAETESQSGGGGRSGALSPGPIVAGEVQRIDVNPPKGTRDFPPEEMRLRNWLFNNFKEVSRLYGFEEVDFPVLENEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVPLPLKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVSLFKRIGIKDSDVGFKVSSRKVLQEVLKCYSIPESLFGKVCVIIDKIEKIPVDEVKKELMAAGVSQEAVQELLQVLSVKSLTELEEKLGSSGEAIADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDHLFSTFGADDIPACGFGFGDAVVVELLREKGLLPDLSLQMDYIVCALDEDLQGSAAMVAHVLRKKGQSVDLVLESKPLKWVFKRAARNNAQRLVLVGSSEWQRGVVGVKILATGEQYEVKLDELI* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1650 505 Gene3D - 413 505 IPR036621 -
Ahy16g1650 505 PIRSF His-tRNA_synth 84 505 IPR004516 GO:0005737
Ahy16g1650 505 PANTHER HISTIDYL-TRNA SYNTHETASE 84 504 IPR004516 GO:0005737
Ahy16g1650 505 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 93 414 IPR006195 -
Ahy16g1650 505 Pfam Anticodon binding domain 424 505 IPR004154 -
Ahy16g1650 505 Pfam Histidyl-tRNA synthetase 93 397 IPR041715 -
Ahy16g1650 505 SUPERFAMILY Class II aaRS and biotin synthetases 90 411 IPR045864 -
Ahy16g1650 505 Hamap Histidine--tRNA ligase [hisS]. 86 505 IPR015807 GO:0004821|GO:0005524|GO:0006427
Ahy16g1650 505 CDD HisRS-like_core 101 407 IPR041715 -
Ahy16g1650 505 PANTHER HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED 84 504 - -
Ahy16g1650 505 TIGRFAM hisS: histidine--tRNA ligase 90 500 IPR015807 GO:0004821|GO:0005524|GO:0006427
Ahy16g1650 505 SUPERFAMILY Class II aaRS ABD-related 420 505 - -
Ahy16g1650 505 Gene3D Bira Bifunctional Protein; Domain 2 84 411 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1650 Ahy-Chr16 49712419 49723915 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1650 K01892 - gmx:100793186 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1650 16 49712419 49723915 Ahy16g1650 16 49712419 49723915 ECH
Ahy16g1650 16 49712419 49723915 Ahy6g1480 6 39326723 39333361 hybridization