Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1182 ATGGCATCCATCTTTGCTAGCACCACAACTCCATCGATCACCCGCGTAGGTCTCTTGCCCAAGCGGGCTCTCGGGGTTTCATCCTCAACCGTTCTTGGGTTGCCAGCCATGGGGAAGGTGGGAAGAGTGAGGTGCTCCATGGAGGAGGGAAAGGCTTGTTCACATGATAGCAACTCGAAGATGGGGATGGGGATGGGGGCATCCTTGATGGCAGCTGCTATGGCTGCAAGCATGTCGAGCCCAGCCATGGCTCTTGTGGATGAGAGGCTGAGCACCGAAGGAACAGGGCTTCCATTTGGTCTGAGCAACAACCTCCTTGGTTGGATCCTGTTTGGTGTGTTCGGTCTCATATGGGCTCTCTACTTTGTCTACACCTCTGATCTTGAAGAGGACGAAGAGTCCGGATTGTCTCTCTAA 417 0.542 MASIFASTTTPSITRVGLLPKRALGVSSSTVLGLPAMGKVGRVRCSMEEGKACSHDSNSKMGMGMGASLMAAAMAASMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYTSDLEEDEESGLSL* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1182 138 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 138 IPR009806 GO:0009507|GO:0009523|GO:0015979
Ahy6g1182 138 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 138 - -
Ahy6g1182 138 Pfam Photosystem II reaction centre W protein (PsbW) 1 138 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1182 Ahy-Chr6 17353195 17354094 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1182 K02721 - gmx:100305788 158.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0149 16 1552429 1553205 Ahy6g1182 6 17353195 17354094 hybridization
Ahy6g1182 6 17353195 17354094 Ahy2g0688 2 11401516 11402731 PCT
Ahy2g0688 2 11401516 11402731 Ahy6g1182 6 17353195 17354094 PCT