Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0946 ATGGCGAAGACACCAATCTTCTCCCTCTTCCAGACCATCTCAATTCTCCTCGTCATCCAATCACCTCTTGCCACGTCACACCCTCTAAACCCCCTCCCAATCATCCTCTCCGTCACTGACTTTGGAGCCTCCGGCGACGGCCTCAACTACGACACCACAGCGATTCAGTCCACCATCGACGCCTGCCCCGACGGACGCCCCTGTCGCGTCACCTTCCCTGCGCCGGGAAAGTACCTGACTGCCACCGTGTTCCTGAAGTCCGGCGTAGTGCTGAACGTGGAGCCCGGCGCCACCGTACTTGGAGGAACTAGGCTGGAGGACTACCCGGAGGACTCGTCGCGGTGGTACGTGATATTGGCGGAGAACGCATCGAACGTGGGGATCGAAGGCGGCGGAGCGGTGGATGGACAGGCGGGGGAATTCGTCGTGAGGGAGGATCCGAGGAAGAACGTAATGGTGAGCTGGAACCAGACAGGAGCGTGCTCCGGCGACGAGTGCCGGCCTCGGTTGATCGGTTTTGTTGATTGCAACCACGTTAGGGTTTCCAACATTTCCCTCAACCACCCTGCTTATTGGTGCTTGCACATGGTACGAAGTAACAACATAAGAATTGAAGATGTTAGAATTTACGGAGACTTCAATATTCCAAACAATGATGGTATTGACATAGATGACTCAAACAACACAATAATCAATAGATGCCACATTGATACAGGAGATGATGCAATATGTCCAAAGTCTTCCACTAGCCCTGTTTACAACCTCACTGCCACCAATTCTTGGATTCGAACCAAATCCTCTGCAATCAAACTTGGAAGTGCTAGTTGGTTTGATTTCAAGCACTTTGTCTTTGATAACATCACTATTGTAGATTCTCATAGAGGACTTGCCTTCCAGATTCGTGATGGAGGAAATGTAAGCGACATTGTATTCTCAAACATAAACATCAGCACAAGATACTATGATCCATTATGGTGGGGGAGAGCAGAACCTATCTATGTCACTACGTGTCCTCGTAATGCAGCCTCAAAGGAGGGTTCAATCTCAAACATACTCTTCATTAACATCACTGCAAATGCTGAAAATGGCATATTTCTATCCGGGTCAAAGAGAGGGTTGTTAAGGAATTTGAGATTCATCAAAATGAATGTCACCTATAGAAGGTTCACAAGTTATGAAGGTGGGTTGTGGGACTATAGGCCAGGGTGCCAAGAATTAGTGAAACACAACACTGCTGGAATGATGATGGAACACATTGATGGTCTTGAGGTTAATAATGTAGAAATGAGATGGTCAAATGAACAAGAACAACTTGATCAGTGGAATAATCCTTTGGAGTTTAGGCCTTCTACTGTGAATAATGTCAGTTTTATTCATTTTAATTCTGGTTTCTACACGAATAGCAAATCAAGTTCATGA 1419 0.4693 MAKTPIFSLFQTISILLVIQSPLATSHPLNPLPIILSVTDFGASGDGLNYDTTAIQSTIDACPDGRPCRVTFPAPGKYLTATVFLKSGVVLNVEPGATVLGGTRLEDYPEDSSRWYVILAENASNVGIEGGGAVDGQAGEFVVREDPRKNVMVSWNQTGACSGDECRPRLIGFVDCNHVRVSNISLNHPAYWCLHMVRSNNIRIEDVRIYGDFNIPNNDGIDIDDSNNTIINRCHIDTGDDAICPKSSTSPVYNLTATNSWIRTKSSAIKLGSASWFDFKHFVFDNITIVDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRNAASKEGSISNILFINITANAENGIFLSGSKRGLLRNLRFIKMNVTYRRFTSYEGGLWDYRPGCQELVKHNTAGMMMEHIDGLEVNNVEMRWSNEQEQLDQWNNPLEFRPSTVNNVSFIHFNSGFYTNSKSSS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0946 472 Pfam Glycosyl hydrolases family 28 63 386 IPR000743 GO:0004650|GO:0005975
Ahy6g0946 472 SUPERFAMILY Pectin lyase-like 24 394 IPR011050 -
Ahy6g0946 472 Gene3D - 25 394 IPR012334 -
Ahy6g0946 472 PANTHER PECTIN LYASE-RELATED 24 464 - -
Ahy6g0946 472 SMART pbh1 226 247 IPR006626 -
Ahy6g0946 472 SMART pbh1 306 328 IPR006626 -
Ahy6g0946 472 SMART pbh1 343 368 IPR006626 -
Ahy6g0946 472 SMART pbh1 199 225 IPR006626 -
Ahy6g0946 472 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 24 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0946 Ahy-Chr6 12385467 12388925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0946 19 466 Glycoside Hydrolase AT3G57790 66.013 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0946 - - gmx:100794954 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0379 16 7356855 7359763 Ahy6g0946 6 12385467 12388925 hybridization