Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0379 ATGGCGAAGACACCAATCTTCTCCCTCTTCCAGACCATCTCATTTCTCCTCGTCATCCAATCACCTTTTGCCACGTCACACCCTCTAAACCCCCTCCCAATCATCCTCTCCGTCACTGACTTTGGAGCCTCCGGCGACGGCCTCAGCTACGACACCACAGCCATTCAGTCCACCATCGACGCCTGCCCCGATGGACGCCCCTGTCGCGTCACCTTCCCTGCGCCGGGAAAGTACCTGACTGCCACCGTGTTCCTGAAGTCCGGCGTAGTGCTGAACGTGGAGCCCGGCGCCACCGTGCTTGGAGGAACTAGGCTGGAGGACTACCCGGAGGACTCGTCGCGGTGGTACGTGATATTGGCGGAGAACGCATCGAACGTGGGGATCGAAGGTGGCGGAGCGGTGGACGGACAGGCGGGGAAATTCGTCGTGAGGGAGGATCCGAGGAAGAACGTAATGGTGAGCTGGAACCAGACAGGAGCGTGCTCCGGCGACGAGTGCCGGCCTCGGTTGATCGGTTTTGTTGATTGCAACCACGTTAGGGTTTCCAACATTTCCCTCAACCACCCTGCTTATTGGTGCTTGCACATGGTACGAAGTAACAACATAAGAATTGAAGATGTTGGAATTTACGGAGACTTCAATATTCCAAACAACGATGGCATTGACATAGATGACTCAAACAACACAATAATCAATAGATGCCACATTGATACAGGAGATGATGCAATATGTCCAAAGTCTTCCACTAGCCCCGTTTACAACCTCACTGCCACCAATTCTTGGATTCGAACCAAATCCTCTGCAATCAAACTTGGAAGTGCTAGTTGGTTTGATTTCAAGCACTTTGTCTTTGATAACATCACTATTGTAGATTCTCATAGAGGACTTGCCTTCCAGATTCGTGATGGAGGAAATGTAAGCGACATTGTATTCTCAAACATAAACATCAGCACAAGATACTATGATCCATTATGGTGGGGGAGAGCAGAACCTATCTATGTCACTACTTGTCCTCGTAGTGCAACCTCAAAGGAGGGTTCAATCTCAAACATACTCTTCATTAACATCACTGCAAATGCTGAAAATGGCATCTTTTTATCCGGGTCAAAGAGAGGGTTGTTAAGGAATTTGAGATTCATCAACATGAATGTCACCTATAGAAGGTTCACAAGTTATGAAGGTGGGTTGTGGGACTATAGGCCAGGGTGCCAAGAATTAGTGAAACACAACACTGCTGGAATGATGATGGAACACATTGATGGTCTTGAGGTTAATAATGTAGAAATGAGATGGTCAAATGAACAAGAACAACTTGATCAGTGGAATAATCCTTTGGAGTTTAGGCCTTCTACTGTGAATAATGTCAGTTTTATTCATTTTAATTCTGGTTTCTACACAAATAGCAAATCAAGTTCATGA 1419 0.4708 MAKTPIFSLFQTISFLLVIQSPFATSHPLNPLPIILSVTDFGASGDGLSYDTTAIQSTIDACPDGRPCRVTFPAPGKYLTATVFLKSGVVLNVEPGATVLGGTRLEDYPEDSSRWYVILAENASNVGIEGGGAVDGQAGKFVVREDPRKNVMVSWNQTGACSGDECRPRLIGFVDCNHVRVSNISLNHPAYWCLHMVRSNNIRIEDVGIYGDFNIPNNDGIDIDDSNNTIINRCHIDTGDDAICPKSSTSPVYNLTATNSWIRTKSSAIKLGSASWFDFKHFVFDNITIVDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRSATSKEGSISNILFINITANAENGIFLSGSKRGLLRNLRFINMNVTYRRFTSYEGGLWDYRPGCQELVKHNTAGMMMEHIDGLEVNNVEMRWSNEQEQLDQWNNPLEFRPSTVNNVSFIHFNSGFYTNSKSSS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0379 472 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 25 464 - -
Ahy16g0379 472 PANTHER PECTIN LYASE-RELATED 25 464 - -
Ahy16g0379 472 Pfam Glycosyl hydrolases family 28 63 386 IPR000743 GO:0004650|GO:0005975
Ahy16g0379 472 SUPERFAMILY Pectin lyase-like 24 394 IPR011050 -
Ahy16g0379 472 Gene3D - 26 394 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0379 Ahy-Chr16 7356855 7359763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0379 19 466 Glycoside Hydrolase AT3G57790 66.231 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0379 - - gmx:100794954 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0379 16 7356855 7359763 Ahy16g0379 16 7356855 7359763 ECH
Ahy16g0379 16 7356855 7359763 Ahy6g0946 6 12385467 12388925 hybridization