Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0924 ATGGCCATCCTGAATAGATATCTTCTTCTCTTTTCATTCTTTGTTAGTAGCATAGTAGTTCCTTTTGTTGGTTGTTATAATGCAAAATTACAAAAGGGCCCACTTGTTGAGAGTACAAATGTTGAAGATGATTATAATATTAATGATAGATCATGGTGGACATTCAAGGGGTTATTCATGCAAAGCAAAGATGTTGTTGGTGGCGATGGGACTTCTTCTTCTTCTTCTTCCTCACATTTGCGTAAAGTTATTAATGTAAATGATTATGGAGCTTGTGGTGGAGGGGATGCTTCTTCTAATACACAGGCGTTTGAGAAGGCATGGCAAACAGCATGTTCTAGAGCCCAGACAATTTTTTTGGTACCTAAAGGAAATAATTACCAACTCAAACCAACCAGATTCTCTGGTCCTTGCAAATCTGACATCCAAGTCCAGATTGAAGGAACAATTGAAGCAACAGATGAGGCATCAGATTATTATAGCAATGATAGCAAATACTGGCTTGTATTTGATAATGTTAAGAAACTATTAGTCCATGGTGGTGGAACCATTGATGGAAATGGCAAAATATGGTGGCAAAAATCGTGTAAAAGGGACAAAACCTTGCCATGCAAGGATGCCCCTACGGCTTTGACATTCTTAAATTGCAGTAATTTGAGGGTTGAGAATTTGTATATATCAAATGCCCAACAAATGCATGTTAGAATTCAAGGTTGCAAAAATGTTATAGCTTCTGGGATTAATGTGACGGCACCAGGGGATAGCCCTAACACTGATGGAATTCATGTCACTAATAGTCACAACGTCCAAATCTCTGATTCTGTTATAGGAACTGGTGACGATTGTATATCAATTGTAAGTGGATCAAAAAATATTCTAGCTACAAATATAACGTGCGGACCTGGCCATGGTATCAGTATTGGAAGCTTAGGGAAGGGAAACTCCGAGGCATATGTTTCAGGAGTAACAGTGAAGCGAGCTCAGATTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGGTCAGGACTTGCTAGCTACATCCAGTTTAAACACATTGTGATGGAAAATGTGACCAATCCAATTTTGATAGACCAGAATTACTGTGACAAACCAAATAAGTCATGCCAAAAACAAAAATCAGCGGTTCAGATATCAAATGTGTTGTACCAAAACATATCAGGGACAAGTGCTTCAGATGTGGCTGTGAAGTTTGATTGTAGTGACTCAGTTCCATGCCAAGACATAATATTGGAGGACATTAATCTCCAAAGTTTTGAAGGAGACAAAGATGCTGAAGCTTTATGCAACAATGTAAAGTTGTCTTATTATGGAGACGTTAACCCTAGCTGCTGCTCATAG 1371 0.3866 MAILNRYLLLFSFFVSSIVVPFVGCYNAKLQKGPLVESTNVEDDYNINDRSWWTFKGLFMQSKDVVGGDGTSSSSSSSHLRKVINVNDYGACGGGDASSNTQAFEKAWQTACSRAQTIFLVPKGNNYQLKPTRFSGPCKSDIQVQIEGTIEATDEASDYYSNDSKYWLVFDNVKKLLVHGGGTIDGNGKIWWQKSCKRDKTLPCKDAPTALTFLNCSNLRVENLYISNAQQMHVRIQGCKNVIASGINVTAPGDSPNTDGIHVTNSHNVQISDSVIGTGDDCISIVSGSKNILATNITCGPGHGISIGSLGKGNSEAYVSGVTVKRAQISGTTNGVRIKTWQGGSGLASYIQFKHIVMENVTNPILIDQNYCDKPNKSCQKQKSAVQISNVLYQNISGTSASDVAVKFDCSDSVPCQDIILEDINLQSFEGDKDAEALCNNVKLSYYGDVNPSCCS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0924 456 ProSitePatterns Polygalacturonase active site. 296 309 IPR000743 GO:0004650|GO:0005975
Ahy6g0924 456 Gene3D - 65 452 IPR012334 -
Ahy6g0924 456 PANTHER ENDO POLYGALACTURONASE 49 455 - -
Ahy6g0924 456 PANTHER - 49 455 - -
Ahy6g0924 456 Pfam Glycosyl hydrolases family 28 116 443 IPR000743 GO:0004650|GO:0005975
Ahy6g0924 456 SMART pbh1 266 287 IPR006626 -
Ahy6g0924 456 SMART pbh1 239 265 IPR006626 -
Ahy6g0924 456 SMART pbh1 348 369 IPR006626 -
Ahy6g0924 456 SMART pbh1 319 340 IPR006626 -
Ahy6g0924 456 SMART pbh1 288 309 IPR006626 -
Ahy6g0924 456 SUPERFAMILY Pectin lyase-like 74 455 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0924 Ahy-Chr6 11927795 11933312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0924 82 454 Glycoside Hydrolase AT3G07970 56.000 8.99e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0924 K01184 - gmx:100817828 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0399 16 7810650 7816025 Ahy6g0924 6 11927795 11933312 hybridization