Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0399 ATGAATAGATATCTTCTTCTCTTTTCATTCTTTGTTAGTAGCATAGTAGTTCCTTTTGTTGGTTGTTATAATGCAAAATTACAAAAGGGCCCACTTGTTGAGAGTACAAATGTTGAAGATGATTATAATATTAATGATAGATCATGGTGGAGATTCAAGGGGTTAGTCATGCAAAGCAAAGATGTTGTTGGTGGCGATCGGACTTCTTCTTCTTCTTCTTCACATTTGCGTAAAGTTATTAATGTAAATGATTATGGAGCTTGTGGTGATGGAGGGGATGCTTCTTCTAATACACAGGCGTTTGAGAAGGCATGGCAAACAGCATGTTCTAGTGGCAAAACAATTCTTTTGGTACCTAAAGGAAATATTTACCAACTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTGACATCCAAGTCCAGATTGAAGGAACAATTGAAGCAACAGATGAGGCATCAGATTATTATAGCAATGATAGCAAATACTGGCTTGTATTTGATAATGTTAAGAAACTATTAGTCCATGGTGGTGGAACCATTGATGGAAATGGCAAAATATGGTGGCAAAAATCGTGTAAAAGGGACAAAACCTTGCCATGCAAGGATGCCCCTACGGCTTTGACATTCTCAAATTGCAGTAATTTGAGGGTTGAGAATTTGTATATATCAAATGCCCAACAAATGCATGTTAGAATTCAAGGTTGCAAAAATGTTATAGCTTCTGGGATTAATGTGACGGCACCAGGGGATAGCCCTAACACTGATGGAATTCATGTCACTAATAGTCACAACGTCCAAATCTCTGACTCCGTTATAGGAACTGGTGACGATTGTATATCAATTGTAAGTGGATCAAAAAATATTCTAGCTACAAATATAACGTGCGGACCTGGCCATGGTATCAGTATTGGAAGCTTGGGGAAGGGAAACTCCGAGGCATATGTTTCAGGAGTAACAGTGAAGCGAGCTCAGATTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGGTCAGGACTTGCTAGCTACATCCAGTTTAAACACATTGTGATGGAAAATGTGACCAATCCAATTTTGATAGACCAGAATTACTGTGACAAACCAAATAAGTCATGCCCAAAACAAAAATCAGCGGTTCAGATATCAAATGTGTTGTACCAAAACATATCAGGGACAAGTGCTTCAGATGTGGCTGTGAAGTTTGATTGTAGTGACTCAGTTCCATGCCAAGACATAATATTGGAGGACATTAACCTCCAAAGTTTTGAAGGAGACAAAGATGCTGAAGCTTTATGCAACAATGTAAAAGTCTCTTATTATGGAGACGTTAACCCTAGCTGCTGCTCATAG 1362 0.3877 MNRYLLLFSFFVSSIVVPFVGCYNAKLQKGPLVESTNVEDDYNINDRSWWRFKGLVMQSKDVVGGDRTSSSSSSHLRKVINVNDYGACGDGGDASSNTQAFEKAWQTACSSGKTILLVPKGNIYQLKPIRFSGPCKSDIQVQIEGTIEATDEASDYYSNDSKYWLVFDNVKKLLVHGGGTIDGNGKIWWQKSCKRDKTLPCKDAPTALTFSNCSNLRVENLYISNAQQMHVRIQGCKNVIASGINVTAPGDSPNTDGIHVTNSHNVQISDSVIGTGDDCISIVSGSKNILATNITCGPGHGISIGSLGKGNSEAYVSGVTVKRAQISGTTNGVRIKTWQGGSGLASYIQFKHIVMENVTNPILIDQNYCDKPNKSCPKQKSAVQISNVLYQNISGTSASDVAVKFDCSDSVPCQDIILEDINLQSFEGDKDAEALCNNVKVSYYGDVNPSCCS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0399 453 PANTHER - 15 452 - -
Ahy16g0399 453 Gene3D - 63 450 IPR012334 -
Ahy16g0399 453 SMART pbh1 236 262 IPR006626 -
Ahy16g0399 453 SMART pbh1 316 337 IPR006626 -
Ahy16g0399 453 SMART pbh1 285 306 IPR006626 -
Ahy16g0399 453 SMART pbh1 263 284 IPR006626 -
Ahy16g0399 453 SMART pbh1 345 366 IPR006626 -
Ahy16g0399 453 SUPERFAMILY Pectin lyase-like 71 452 IPR011050 -
Ahy16g0399 453 Pfam Glycosyl hydrolases family 28 114 441 IPR000743 GO:0004650|GO:0005975
Ahy16g0399 453 ProSitePatterns Polygalacturonase active site. 293 306 IPR000743 GO:0004650|GO:0005975
Ahy16g0399 453 PANTHER ENDO POLYGALACTURONASE 15 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0399 Ahy-Chr16 7810650 7816025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0399 78 451 Glycoside Hydrolase AT3G07970 56.383 1.98e-146 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0399 K01184 - gmx:100817828 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0399 16 7810650 7816025 Ahy6g0924 6 11927795 11933312 hybridization