Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0811 ATGGCGTTTGCTTCAAACTCGGTTCTGAAAACGCTGAGGCTGAAGAATCCAAAGCTGGTGCTTTTGGAATCATGCAGCAACCTGATCGACCTCACAATCATCCACGCCCACATGCTCCGAACCCACTTCTTCTTCGACGTCTTTGCCGTCAGTCGCCTCATCGCTCTCTGCACAGACTCCAACAAGAACCTTCTCCACTACGCCATAAGGCTATTCCCCCAAATCGAAAACCCCAACCTATTCATCTTGAACGCCCTCATACGAGGTTGTTCCACCAGCGATGACCCCGCTGCTTCCTTTCGCTATTACATCCAATCGCAGCGCATTGGTCTCTTGCCTGATAACATCACTTACCCATTTCTGGTTAAGGCTAGTGCTCAACTTGAGAATGCTGTTATGGGCACGCAAGCACATGGTCAAATCATAAAGCATGGATTTGAACGCGATTGCTATGTCCAAAACTCCCTCGTTCATATGTATGCCACTGTTGAGGATTCAAAGTCTGCAAGATGCGTTTTTGAAGAGATTTCTGGGTTTGATGTGGTGTCTTGGACTTCCATGATTGCTGGGTACCATAAAGCGGGGGATGTTGACTCTGCACGCGAACTGTTTGATATAATGCCCGAGAGAAATTTGGTGACTTGGAGCACTATGATTAGTGGGTATTCCCGAAACAATAGGTATGATAAGGCTGTTGAGCTGTTTCGTGTTCTTCGGAGTGAAGGGGTGGTGGCTAATGAGCCTGTCATGGTGGGGGTGATATCCGCTTGTGCTCATCTGGGTGCTCTTGCTATGGGGAAGGAAGCTCATGAGTATGTGGTTATGAATGGCTTGTCTTTGAATCTGATTCTTGGGACAGCTCTTGTTGACATGTATGCGAGATGTGGAAACATTGCGAAAGCTATTCAGGTTTTTGAGCAGTTGGCCGAGAAGGACGCACTTTGTTGGACAGCTTTGATTGCTGGACTAGCCATGCACGGCCATGCAGAGAAAGCGCTTTGGTATTTTTCGGAAATGGTGAAATCCGGGCTAGTTCCGTGGGACATTACATTTACGGCGGTGTTGACAGCTTGCAGCCATGGAGGATTGGTAGATAGAGGCCTAGAAATATTTGAGAGCATGAAACATGATCATGGAATTGAGCCAAGATTGGAGCATTATGGATGTATGGTTGACCTACTTGGCCGTGCAGGGAAGTTGGCGGAGGCGGAGAAATTTGTTCTTGAAATGCCCGTAAAGCCGAATGCTCCGATATGGGGAGCATTGCTAGGAGCTTGCCGGATTCACAGAAATGCAGAGGTTGGGGAGAGAGTTGGAAAGATTTTGATAGAGATGCAACCAGAACACAGTGGTTACTATGTGCTGCTTTCAAACATATATGCTCGCACAAACAAGTGGAGAGATGTTACCATTATGAGAGAAATCATGAAGGAAAAAGGAGTAAGAAAGCCTCCTGGGTATAGTCTCATTGAGGTAGATGGAAAAGTTCATGAATTTACAATTGGAGATAAATCACACCCAGAAATCGAGAAAATAGAGAGAATATGGGAAGATATACTGCAAAAAATAAGGCTGGCAGGATACATTGGAAATACTGATGAAGCTTTGTTTGACATAGATGAGGAAGAAAAGGAAGATGCACTTAACAGGCATAGTGAGAAGCTGGCAATTGCATATGGAATTATGAAGATTCGAGCCCCTTCACCGATTCGGATTGTGAAAAACTTGCGGGTCTGTGAAGATTGTCACACTGCTACAAAGTTTATTTCAAAGGTTTTCCAAGTAGAGTTGATTGTGAGAGATCGAAACCGATTCCATCACTTTAAAGAAGGCACGTGTTCTTGTATGGATTACTGGTGA 1860 0.4527 MAFASNSVLKTLRLKNPKLVLLESCSNLIDLTIIHAHMLRTHFFFDVFAVSRLIALCTDSNKNLLHYAIRLFPQIENPNLFILNALIRGCSTSDDPAASFRYYIQSQRIGLLPDNITYPFLVKASAQLENAVMGTQAHGQIIKHGFERDCYVQNSLVHMYATVEDSKSARCVFEEISGFDVVSWTSMIAGYHKAGDVDSARELFDIMPERNLVTWSTMISGYSRNNRYDKAVELFRVLRSEGVVANEPVMVGVISACAHLGALAMGKEAHEYVVMNGLSLNLILGTALVDMYARCGNIAKAIQVFEQLAEKDALCWTALIAGLAMHGHAEKALWYFSEMVKSGLVPWDITFTAVLTACSHGGLVDRGLEIFESMKHDHGIEPRLEHYGCMVDLLGRAGKLAEAEKFVLEMPVKPNAPIWGALLGACRIHRNAEVGERVGKILIEMQPEHSGYYVLLSNIYARTNKWRDVTIMREIMKEKGVRKPPGYSLIEVDGKVHEFTIGDKSHPEIEKIERIWEDILQKIRLAGYIGNTDEALFDIDEEEKEDALNRHSEKLAIAYGIMKIRAPSPIRIVKNLRVCEDCHTATKFISKVFQVELIVRDRNRFHHFKEGTCSCMDYW* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0811 619 Gene3D Tetratricopeptide repeat domain 285 516 IPR011990 GO:0005515
Ahy6g0811 619 Gene3D Tetratricopeptide repeat domain 18 178 IPR011990 GO:0005515
Ahy6g0811 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Ahy6g0811 619 Pfam PPR repeat 213 243 IPR002885 -
Ahy6g0811 619 Pfam PPR repeat 386 411 IPR002885 -
Ahy6g0811 619 Pfam PPR repeat 286 311 IPR002885 -
Ahy6g0811 619 Pfam PPR repeat 182 211 IPR002885 -
Ahy6g0811 619 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 82 593 - -
Ahy6g0811 619 Pfam PPR repeat family 312 359 IPR002885 -
Ahy6g0811 619 TIGRFAM PPR: pentatricopeptide repeat domain 213 246 IPR002885 -
Ahy6g0811 619 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Ahy6g0811 619 TIGRFAM PPR: pentatricopeptide repeat domain 182 212 IPR002885 -
Ahy6g0811 619 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Ahy6g0811 619 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 82 593 - -
Ahy6g0811 619 Pfam E+ motif 496 523 IPR046849 -
Ahy6g0811 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 210 IPR002885 -
Ahy6g0811 619 Pfam DYW family of nucleic acid deaminases 527 619 IPR032867 GO:0008270
Ahy6g0811 619 Gene3D Tetratricopeptide repeat domain 179 276 IPR011990 GO:0005515
Ahy6g0811 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Ahy6g0811 619 Pfam E motif 429 491 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0811 Ahy-Chr6 10142010 10144284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0811 21 619 Glycoside Hydrolase AT3G49170 33.879 6.48e-122 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0811 - - gmx:100797063 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3345 16 150409391 150411717 Ahy6g0811 6 10142010 10144284 hybridization