Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3345 ATGGCGTTTGCTTCAAACTCGGTTCTGAAAACGCTGAGGCTGAAGAATCCAAAGCTGGTGCTTTTGGAATCATGCAGCAACCTGATCGACCTCACAATTATCCACGCCCACATGCTCCGAACCCACTTCTTCTTCGACGTCTTTGCCGTCAGTCGCCTCATCGCTCTCTGCACAGACTCCAACAAGAACCTTCTCCACTACGCCATAAGGCTATTCCCCCAAATCGAAAACCCAAACCTATTCATCTTGAACGCCCTCATACGAGGTTGTTCCACCAGCGATGACCCCGCTGCTTCCTTTCGCTATTACATCCAATCGCAGCGCATTGGTCTCTTGCCTGATAACATCACTTACCCGTTTCTGGTTAAGGCTTGTGCTCAACTTGAGAATGCTATTATGGGCACGCAAGCACATGGTCAAATCATAAAGCATGGATTTGAACGCGATTGCTATGCCCAGAACTCCCTCGTTCATATGTATGCCACTGTTGAAGATTCAAAGTCTGCAAGATGCGTTTTTGAAGAGATTTCTGGGTTTGATGTGGTGTCTTGGACTTCCATGATTGCTGGGTACCATAAAGGGGGGGATGTTGACTCTGCACGCGAACTGTTTGATATAATGCCGGAGAGAAATTTGGTGACTTGGAGCACTATGATTAGTGGGTATGCCCGAAACAATAGGTATGATAAGGCTGTTGAGCTGTTTCATGTTCTTCGGAGTGAAGGGGTGATGGCTAATGAGCCTGTCATGGTGGGGGTGATATCCGCTTGTGCTCATCTGGGTGCTCTTGCTATGGGGAAGGAAGCTCATGAGTATGTGGTTATGAATGGCTTGTCTTTGAATCTGATTCTTGGGACAGCTCTTGTTGACATGTATGCGAGATGTGGAAACATTGCGAAAGCTATTCGGGTTTTTGAGCAGTTGGCCGAGAAGGACACACTTTGTTGGACAGCTTTGATTGCTGGACTAGCCATGCACGGCCATGCAGAGAAAGCGCTTTGGTATTTTTCGGAAATGGTGAAATCCGGGCTAGTTCCGTGGGACGTTACATTTACGGCGGTGTTGACAGCTTGCAGCCATGGAGGATTGGTAGATAGGGGCCTAGAAATATTTGAGAGCATGAAACATGATCATGGAATTGAGCCAAGATTGGAGCATTATGGATGTATGGTTGACCTACTTGGCCGTGCAGGGAAGTTGGCGGAGGCAGAGAAATTTGTTCTTGAAATGCCCATAAAGCCGAATGCTCCGATATGGGGAGCATTGCTAGGAGCTTGCCGGATTCACAGAAATGCAGAGGTTGGGGAGAGAGTTGGAAAGATTTTGATAGAGATGCAACCAGAACACAGTGGTTACTATGTGCTGCTTTCAAACATATATGCTCGCACAAACAAGTGGAGAGATGTTACCATTATGAGAGAACTCATGAAGGAAAAAGGAGTAAGAAAGCCTCCTGGGTATAGTCTCATTGAGGTAGATGGAAAAGTTCATGAATTTACAATTGGAGATAAATCACACCCAGAAATTGAGAAAATAGAGAGAATGTGGGAAGATATACTGCAAAAAATAAGGCTGGCAGGATACATTGGAAATACTGATGAAGCTTTGTTTGACATAGATGAGGAAGAAAAGGAAGATGCACTTGACAGGCATAGTGAGAAGCTGGCAATTGCATATGGAATTATGAAGATTCGACCTCCTTCACCAATTCGGATTGTGAAGAACTTGCGGGTTTGTGAAGATTGTCACACTGCTACAAAGTTGATTTCAAAGGTTTTCCAAGTAGAGTTGATTGTGAGAGATCGAAACCGATTCCATCACTTTAAAGAAGGCACGTGTTCTTGTATGGATTACTGGTGA 1860 0.4522 MAFASNSVLKTLRLKNPKLVLLESCSNLIDLTIIHAHMLRTHFFFDVFAVSRLIALCTDSNKNLLHYAIRLFPQIENPNLFILNALIRGCSTSDDPAASFRYYIQSQRIGLLPDNITYPFLVKACAQLENAIMGTQAHGQIIKHGFERDCYAQNSLVHMYATVEDSKSARCVFEEISGFDVVSWTSMIAGYHKGGDVDSARELFDIMPERNLVTWSTMISGYARNNRYDKAVELFHVLRSEGVMANEPVMVGVISACAHLGALAMGKEAHEYVVMNGLSLNLILGTALVDMYARCGNIAKAIRVFEQLAEKDTLCWTALIAGLAMHGHAEKALWYFSEMVKSGLVPWDVTFTAVLTACSHGGLVDRGLEIFESMKHDHGIEPRLEHYGCMVDLLGRAGKLAEAEKFVLEMPIKPNAPIWGALLGACRIHRNAEVGERVGKILIEMQPEHSGYYVLLSNIYARTNKWRDVTIMRELMKEKGVRKPPGYSLIEVDGKVHEFTIGDKSHPEIEKIERMWEDILQKIRLAGYIGNTDEALFDIDEEEKEDALDRHSEKLAIAYGIMKIRPPSPIRIVKNLRVCEDCHTATKLISKVFQVELIVRDRNRFHHFKEGTCSCMDYW* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3345 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 210 IPR002885 -
Ahy16g3345 619 Pfam DYW family of nucleic acid deaminases 527 619 IPR032867 GO:0008270
Ahy16g3345 619 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 82 593 - -
Ahy16g3345 619 Gene3D Tetratricopeptide repeat domain 286 505 IPR011990 GO:0005515
Ahy16g3345 619 Gene3D Tetratricopeptide repeat domain 18 177 IPR011990 GO:0005515
Ahy16g3345 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Ahy16g3345 619 Gene3D Tetratricopeptide repeat domain 178 277 IPR011990 GO:0005515
Ahy16g3345 619 TIGRFAM PPR: pentatricopeptide repeat domain 213 244 IPR002885 -
Ahy16g3345 619 TIGRFAM PPR: pentatricopeptide repeat domain 182 212 IPR002885 -
Ahy16g3345 619 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Ahy16g3345 619 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Ahy16g3345 619 Pfam PPR repeat 213 243 IPR002885 -
Ahy16g3345 619 Pfam PPR repeat 386 410 IPR002885 -
Ahy16g3345 619 Pfam PPR repeat 182 211 IPR002885 -
Ahy16g3345 619 Pfam PPR repeat family 311 359 IPR002885 -
Ahy16g3345 619 Pfam E motif 429 491 IPR046848 -
Ahy16g3345 619 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 82 593 - -
Ahy16g3345 619 Pfam E+ motif 496 523 IPR046849 -
Ahy16g3345 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3345 Ahy-Chr16 150409391 150411717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3345 21 619 Glycoside Hydrolase AT3G49170 34.206 4.77e-123 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3345 - - gmx:100797063 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3345 16 150409391 150411717 Ahy6g0811 6 10142010 10144284 hybridization