Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0792 ATGGCGGTTTCGGAGGAAGAGTGTTCTTCCGCGAAGCCAGGACCGTCTTCGTATCCCTCCACGAAGCCCTACTATCTCTCCAAGTGCGTTCTCAGAGGCAGTGCCGTTCTTCAGGTTCTTTATGGTCACATCCGTTCACCTTCATCGAACGACGTAGTTTTCGGCAAGGAGACATCAATAGAATTGGTGGTCATTGGTGAGGATGGGATTGTACAATCAGTGTGTGATCAACCAGTTTTTGGCATTATCAAAGATCTTGCAATATTGCCATGGAATGCCAAATTCCAAATGCGGGATCCGCAGATGTGGGGTAAAGATCTTTTGATTGCTTTATCCGATTCTGGGAAGCTTTCATTCCTCACATTTTGCAATGAAATGCACAGATTTTTCCCTGTAACACATGTTCATCTATCTAGTCCTGGAAACACAAGGGATCTCCCTGGAAGATTGCTAGCAGTTGATTCTAGTGGTTGTTTTGTTGCTGCCAGTGCATATGAAGATCGGTTGGCTCTATTTTCTGTGTCAGGGATTGGCAATGATATTGTTGATGAGAGGATAATGTATCCTACTGAAAGTGAAGGGACTGCAAGTATTTCTACAAGTAATTACAGAAGCACTTTAAGTGGTACTATTTGGAGCATGTGCTTTATTTCACAAGATTCCAAGCAATCAAACAAGGAGCATAATCCTATACTAGCTGTTGTTCTAAATAGGAGGGGAAAACCTCAAAATGATTTGATACTGTTGGAATGGAATATTAAAGCACGTACAATCTCTGTCATTTCTCAGTTTGTTGAAGCTGAAGCTGGGTTTCTAGCACTTAACATTGTTGAAGTTCCTAACTCTCATGGACTTGCATTTCTATTCAGAGAAGGTGATGCTCTTTTGATGGATTTAAGAGACGCTTGCAACCCATGTTGCGTCTATAGGACTAACTTAAACTTTTTACCCAATGCCATGGAGGAGCAGACTTATATTGAGGACTGTTGTAAATTACAAGATGTTGACGATGAACGCTTTAATGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTATGATCCTATGTGCATAGACAATGACAGTGCTAGTACTAATCCAAGTTTCAAGTATGTATGCTCATGGAGTTGGGAACCTGAAAATAATAAAGATCCCAGGATGATCTTGTCTGTAAATACTGGAGAATTTTTTATGATTGAAATTCTTTTTGAATCTGATGGCCTTAAAGTTAGTATCTCTGAGTGTCTTTATAAAGGTATGCCTTGTAAAGCACTTTTGTGGGTTAAAGGTGGATATATAGCTGCCTTTATAGAAATGGGAGATGGCATGGTTCTGAAATTGGAAGATGGAAGGCTATGCTATACAAACCCTATTCAAAATATTACACCAATACTGGACATGGCAGTTGTGGATTATCATGATGAGAAACATGATCAAGTGTTTGCCTGCAGTGGTGAGGCACCTGAGGGGTCGTTAAGGATAATTCGGAGTGGTATCAGTGTAGACAAGCTAATTAGGACTGCTCCCATATATCAGGGGGTCTATGGCGCTTGGACTGTTCGAATGAAAATTACTGATTCATATCATTCTTTTCTAGTGCTATCATTTGTTGAGCAGACAAGAATATTGTCAGTTGGATTAAGTTTTACAGACGTGACTGATTCAGTTGGTTTCCAACCTAATGTATGTACCTTGGCATGTGGCCTTTTTAGTGATGGTCTGCTTGTCCAGATCCACAAATCTACTGTTAGGCTTTGTTTGCCTACCAAGGGTGCTCATGCTGAAGGTGTATCCATGTCCTCTCCTATTTGCACATCTTGGTCTCCAGATAACATGACCATCAATTTGGGGGCAGTTGGGCACAATTTCATAGTTGTGTCCACCTCTAACCCATGCTTTTTGTTTATTCTAGGGGTAAGGTTGCTATCAGCTTATCATTATGAAATTTATGAAATGCATCATTTAGGACTGCAGAATGAATTGTCATGCATTTCCATCCCTAGACAAAAAACTGAGCAGAAACAACCAAATTCATCTTCTGCAAATAAAAGAAGTACTTCTTCCCTTGTTAGTGGAGTTGACATCAATAAAACCTTTGTTATTGGCACACACAAGCCATCTGTTGAAATTTTGTCTTGTGGTCCTGATGGAGTTACGATGGTTGCTTGTGGGACAATTTCATTAACAAATACAATGGGGACTACCTTAAGTGGCTGTGTACCTGAAGCTGTGCAGCTTGTATTTGTTGATAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTTCTTCGCTTTGAGTGGCCAACAAGATCATCTTCAATACCATTGACCGTGGATAATGCTGATTTATGTTCCACAAATTTGGTGAATTCTGTGGCCAATGCTTTTGACAAGAGAAATGACCTGCCTTCCGTGCTTCAGTTGATTGCCATTCGTCGTATTGGTGTTACTCCAGTTTTCTTGGTGCCCTTGGATGACTCGCTTGATGCTGATATAATTGTTCTATGTGAGAGACCTTGGTTGTTGCATAGCGCAAGACACAGCCTTTCCTATACTTCTATTTCATTTCAGCCATCCACACATGTTACTCCTGTTTGCTCCATTGAGTTTCCTAAAGGAATACTATTTGTTGCAGAAAACAGTTTACATCTTGTGGAGATGGTGCACAGTAAGAGAATTAATGCACAGAAGTTTCATTTAGAAGGCACTCTACGCAAGATCCTGTATCACAATGAAAGCAGGATGTTGCTTGTGTTGAGGACTGGACTGAATTATGGTACATGCTCGTCTGACATATGTTTTGTGGATCCCACAAGTGGGTCAGTGCATTCATCTTTTAGACTCGAACCTGGAGAAACAGGAAAATCCATGGAATTAGTAAGGGTTGGAAGTGAGCAGGCTCTTGTAGTTGGAACTAGTCTGTCTTCTGGTCCGGCCATAATGCCCAGTGGGGAAGCTGAGAGTGCTAGGGGTCGCCTTCTTGTTCTTTGCCTTGATCATGTGCAAAATTCAGATAGTGGTTCAATGACATTATGTTCAAAGGCAGGATCGTCATCTCTACGAACTTCACCATTTCATGAAATTGTTACATATGCTCCCGAACAGTTATCGGGCAGCAGTCTTGGCAGCAGCCCCGATGATAATAGTTCCGATGGGATCAAACTAGATGAAAATGAAGTATGGCAGTTCCGGTTTGCTTATGGCAATACATGGCAGGGAATGGTGCTTGCAATCTGTCCTTATCTTGATCGTTACTTCCTGGCATCAGCTGGCAATACTTTTTATGTTTGTGGTTTCCCAAATGACAATCCCCAAAGAGTGAGAAAGTTTGCGCAGGGAAGGACACGTTTCTTGGTAACATCATTGACTGTACATTTCACTAGAATCGCTGTTGGTGATTGTCGTGATGGTGTCCTTTTCTATTCCTACCATGAGGATACAAAAAAATTGGAGCAACTTTACTCTGACCCATCGCTGAGGTTAGTTGCTGATTGCATTCTTATGGATGCTGAAACGGCTGTCGTTTCGGATCGTAAAGGAAGCATTGCTGTTTTATGTTCAGATCATTTGGAAGATAATGCAAGTCCAGAATGCAATTTGTCACTAAATTGTGCTTATTTCATGGGTGAAATAGCCATGAGCATTCAGAAGGGTTCATATTCATACCGTCTTCCAGCTGACGATGCTCTGCAAGGAGCCAATTGGCCCAAGACAAACATTGATTCACTACAAAATACAATTATTGCTAGTACTCTGTTAGGAAGCATCATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGCTCTTAGAAGCAGTGCAAACAAGACTTGCTGTACATCATTTGACTGCACCTATTCTTGGGAACGATCATAATGAGTTTCGCAGCCGTGAAAATCCAGCCGGAACACCCAAAATACTTGATGGTGATATGTTGACTCAGTTTCTGGAGTTGACAAGCATGCAACAACAGATCATTTTATCATCCGACCCACCGGAAATGGTAAAATCAAGTTTGAAGTCACTCCTACCTCCACATGTTCCTATTAATCAGGTTGTTCAACTTCTTGAACGAGTTCATTATGCGCTGAACTAA 4098 0.4122 MAVSEEECSSAKPGPSSYPSTKPYYLSKCVLRGSAVLQVLYGHIRSPSSNDVVFGKETSIELVVIGEDGIVQSVCDQPVFGIIKDLAILPWNAKFQMRDPQMWGKDLLIALSDSGKLSFLTFCNEMHRFFPVTHVHLSSPGNTRDLPGRLLAVDSSGCFVAASAYEDRLALFSVSGIGNDIVDERIMYPTESEGTASISTSNYRSTLSGTIWSMCFISQDSKQSNKEHNPILAVVLNRRGKPQNDLILLEWNIKARTISVISQFVEAEAGFLALNIVEVPNSHGLAFLFREGDALLMDLRDACNPCCVYRTNLNFLPNAMEEQTYIEDCCKLQDVDDERFNVAACALLELSDYDPMCIDNDSASTNPSFKYVCSWSWEPENNKDPRMILSVNTGEFFMIEILFESDGLKVSISECLYKGMPCKALLWVKGGYIAAFIEMGDGMVLKLEDGRLCYTNPIQNITPILDMAVVDYHDEKHDQVFACSGEAPEGSLRIIRSGISVDKLIRTAPIYQGVYGAWTVRMKITDSYHSFLVLSFVEQTRILSVGLSFTDVTDSVGFQPNVCTLACGLFSDGLLVQIHKSTVRLCLPTKGAHAEGVSMSSPICTSWSPDNMTINLGAVGHNFIVVSTSNPCFLFILGVRLLSAYHYEIYEMHHLGLQNELSCISIPRQKTEQKQPNSSSANKRSTSSLVSGVDINKTFVIGTHKPSVEILSCGPDGVTMVACGTISLTNTMGTTLSGCVPEAVQLVFVDKYYVLAGLRNGMLLRFEWPTRSSSIPLTVDNADLCSTNLVNSVANAFDKRNDLPSVLQLIAIRRIGVTPVFLVPLDDSLDADIIVLCERPWLLHSARHSLSYTSISFQPSTHVTPVCSIEFPKGILFVAENSLHLVEMVHSKRINAQKFHLEGTLRKILYHNESRMLLVLRTGLNYGTCSSDICFVDPTSGSVHSSFRLEPGETGKSMELVRVGSEQALVVGTSLSSGPAIMPSGEAESARGRLLVLCLDHVQNSDSGSMTLCSKAGSSSLRTSPFHEIVTYAPEQLSGSSLGSSPDDNSSDGIKLDENEVWQFRFAYGNTWQGMVLAICPYLDRYFLASAGNTFYVCGFPNDNPQRVRKFAQGRTRFLVTSLTVHFTRIAVGDCRDGVLFYSYHEDTKKLEQLYSDPSLRLVADCILMDAETAVVSDRKGSIAVLCSDHLEDNASPECNLSLNCAYFMGEIAMSIQKGSYSYRLPADDALQGANWPKTNIDSLQNTIIASTLLGSIMIFIPLSREEYELLEAVQTRLAVHHLTAPILGNDHNEFRSRENPAGTPKILDGDMLTQFLELTSMQQQIILSSDPPEMVKSSLKSLLPPHVPINQVVQLLERVHYALN* 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0792 1365 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 19 1362 - -
Ahy6g0792 1365 Pfam CPSF A subunit region 1064 1318 IPR004871 GO:0003676|GO:0005634
Ahy6g0792 1365 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 19 1362 - -
Ahy6g0792 1365 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 666 IPR018846 -
Ahy6g0792 1365 Gene3D - 35 461 IPR015943 GO:0005515
Ahy6g0792 1365 Gene3D - 1071 1237 IPR015943 GO:0005515
Ahy6g0792 1365 Gene3D - 499 893 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0792 Ahy-Chr6 9990386 10000957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0792 K12830 - gmx:100806799 2144.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3367 16 150593254 150603283 Ahy6g0792 6 9990386 10000957 hybridization