Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0195 ATGGAAGAAGCAAAACCCAACAAGGCGGCCCTGCTCTCATTCCTGGCCTTCTTCCTCTCACTCTCCGCAGCAGCAGCCACTTCTAACTTCCAAACACAAACACTAACCGTCAACACTCTCCCTCACCCACCCATCCTCTCATGGCCCGAATCCGAATCCAAATCCATCTCCGATTTCGACACAGCCGAATCCGAAGCGGAATCCACCGCCATCTTCTCCCTGCAACTCCACCACATAGACGCTCTTTCCACTAACACAACACCACACCAGCTCTTCAACCTAAGGCTCCAACGAGACGCCGCCAGGGTCCACGCCCTGACCTCCATTGCCGCAGCTACCAACCGGACCCGTGCCGGGACCCGTTCTCCCAGATCCGTTCCGGGTTTCAGCAGCTCAGTCATCTCTGGTCTAGCTCAAGGAAGTGGCGAGTACTTCACGCGCCTCGGTGTTGGAACCCCAGCCAGGTACGTGTACATGGTGCTCGACACCGGAAGCGACGTCGTTTGGCTTCAGTGCGCGCCATGCAGAAAATGCTACCAAGAAGCCGATCCAGTTTTCGACCCATCTAAATCCCGCACCTTCGCGAAAATCCCCTGTGGCGCCCCTCTCTGCCGCCGCCTTGACTCTCCGGGATGCAACCGGAACAAGGTCTGCCAGTATCAGGTCTCCTACGGCGACGGTTCCTTCACATTCGGTGATTTCTCCACCGAAACGCTCACATTTCGAAGGAGGAGGGTTGCGCGCGTGGCACTCGGGTGTGGTCACGACAACGAGGGTTTATTCGTCGGTGCCGCTGGTCTTTTGGGCCTGGGTCGTGGAAGGTTATCATTCCCAGCTCAAACCGGACGCCGGTTCAACCAGAAATTCTCTTACTGCCTCGTTGACCGATCCGCTTCTTCCAAACCATCTTCAATCGTTTTTGGTGACGCTGCCGTTTCTCGAACCGCTCGGTTCACTCCGCTTCTCAAAAACCCTAAGCTTGACACCTTCTACTACGTTGAGCTTATAGGCATCAGCGTCGGCGGCACTGCCGTTCGCGGAGTCTCCGCCTCGCTCTTTCGGATCGACGCCACAGGGAACGGTGGCGTTATAATCGATTCGGGTACTTCAGTAACCCGCTTGACCCGACCCGCTTACATCGCCCTGAGGGATGCTTACCGTGCCGGAGCCTCTCATCTGAAGCGTGCGCCGGAGTTTTCGCTCTTCGACACGTGTTACGATCTGTCGGGGCAGACTTCGGTGCAGGTTCCGAAGGTGGTGCTGCACTTCCGAGGTGCTGACGTGTCGCTGCCGGCTTCGAACTACATGATCCCGGTGGACAACAGTGGCAGCTTCTGCTTTGCGTTCGCCGGAACGATGAGCGGGTTGTCCATTATTGGCAACATTCAGCAACAAGGGTTTCGGGTCGTGTACGACCTTGCGGGGTCTCGGGTCGGGTTCGCGGAGCGAGGGTGCGAGTGA 1461 0.5736 MEEAKPNKAALLSFLAFFLSLSAAAATSNFQTQTLTVNTLPHPPILSWPESESKSISDFDTAESEAESTAIFSLQLHHIDALSTNTTPHQLFNLRLQRDAARVHALTSIAAATNRTRAGTRSPRSVPGFSSSVISGLAQGSGEYFTRLGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYQEADPVFDPSKSRTFAKIPCGAPLCRRLDSPGCNRNKVCQYQVSYGDGSFTFGDFSTETLTFRRRRVARVALGCGHDNEGLFVGAAGLLGLGRGRLSFPAQTGRRFNQKFSYCLVDRSASSKPSSIVFGDAAVSRTARFTPLLKNPKLDTFYYVELIGISVGGTAVRGVSASLFRIDATGNGGVIIDSGTSVTRLTRPAYIALRDAYRAGASHLKRAPEFSLFDTCYDLSGQTSVQVPKVVLHFRGADVSLPASNYMIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFAERGCE* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0195 486 Gene3D Acid Proteases 307 486 IPR021109 -
Ahy6g0195 486 Gene3D Acid Proteases 128 306 IPR021109 -
Ahy6g0195 486 ProSiteProfiles Peptidase family A1 domain profile. 144 481 IPR033121 -
Ahy6g0195 486 CDD cnd41_like 143 485 IPR033873 -
Ahy6g0195 486 SUPERFAMILY Acid proteases 137 485 IPR021109 -
Ahy6g0195 486 PANTHER ASPARTYL PROTEASES 13 485 IPR001461 GO:0004190|GO:0006508
Ahy6g0195 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 363 374 IPR001969 GO:0004190|GO:0006508
Ahy6g0195 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 485 - -
Ahy6g0195 486 Pfam Xylanase inhibitor C-terminal 331 481 IPR032799 -
Ahy6g0195 486 Pfam Xylanase inhibitor N-terminal 144 309 IPR032861 -
Ahy6g0195 486 PRINTS Pepsin (A1) aspartic protease family signature 457 472 IPR001461 GO:0004190|GO:0006508
Ahy6g0195 486 PRINTS Pepsin (A1) aspartic protease family signature 363 374 IPR001461 GO:0004190|GO:0006508
Ahy6g0195 486 PRINTS Pepsin (A1) aspartic protease family signature 150 170 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0195 Ahy-Chr6 2482473 2484542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0195 134 486 Miscellaneous Gene Families AT1G77480 25.964 5.07e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0195 K22683 - gmx:100794269 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1226 16 22523345 22525402 Ahy6g0195 6 2482473 2484542 hybridization
Ahy6g0195 6 2482473 2484542 Ahy12g0342 12 4881934 4883640 PCT
Ahy12g0342 12 4881934 4883640 Ahy6g0195 6 2482473 2484542 PCT