Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0061 ATGGCGTCGTCATACCCTGGTTCCGTCAGTGCTGCCCAGGTGGGTTCCTACTTTGTTGGACAGTACTACCAAGTTCTGCGGCAACAGCCCAATCTGGTTCACCAGTTCTACTCTGATTCAAGCAGCATGGTTCGCGTTGATGGAGATTCCACCACGACTGCTTCCGATGTCCTGCAAATTCACTCTATCGTCACCTCACTTGATTTTATTACAATTGAGATCAAGACAATCAATTCTCTCGATTCTTGGGATGGAGGTGTGCTTGTAGTTGTCTCAGGTTCTGTCAAGATGAAGGATATCAGTGGGAGACGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTCGTACTGAATGATGTTTTTCATTTTGTTGATGATGGAGTAGTATACTCAAATCTGGCACCAGTGGCATCCGAAAAGATTGACACACAACATGAATCAACGTCTCTTGCAGAGCCACCAGCTCCAGATTATGATTTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTGCATATAGGTGATGATCCGGTGGACAAATATAGTCTTCCTGAGCAACAGGAACAGCAGCTACATGAAGATCTTGAAGATGAAATTGTGGTTGAAGAAACTCCTGTAGAGGAGACATCACCACCCCGTCAAAATGTTGCACATACCACCCATGAAATCCCTGTTTCTCATGTGGAGGAGTCTTTAGAGGAGCCTCCCAAGAAAACTTACGCATCTATTTTGCAAGTTGCTAGAGGGCTGTCAACTGCGCCGCAGCATACACCACAGCATTCCTTTAAAAGTGCCCCACCTCCTTCAGTATTAAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCCTCATCTACGTACGCTCCTGAGTTTGGTTCTGAGGCTAATGAGGAAGCCTATGGACTAGAAGAAGAAGGAGAAGTGACTTCTGTCTACGTGAGGAACTTGTCTCCTAATGTCACTGAATATGAGATCGACCAGGAGTTTAGAAGTTTTGGAAAAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCTTTTGTGGAGTTTGAAGACATTATTGGTGTTCAAAATGCTCTTCAGGCATCTCCCATACAATTGGCTGGTAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCGGTGCGGCAGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAACGGATGCTCCAAGGGGGCGTTTTGGTGGTAGGGGACCGGGCAGGGGAAATACTCAGGATGCATCAGAGTATACCAGACTAAGAGGTGAAGGTTATCCTCAGCGTGGTCCGCGATGA 1356 0.4653 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMVRVDGDSTTTASDVLQIHSIVTSLDFITIEIKTINSLDSWDGGVLVVVSGSVKMKDISGRRKFVQTFFLAPQEKGYFVLNDVFHFVDDGVVYSNLAPVASEKIDTQHESTSLAEPPAPDYDLEEEAREYVNSVHIGDDPVDKYSLPEQQEQQLHEDLEDEIVVEETPVEETSPPRQNVAHTTHEIPVSHVEESLEEPPKKTYASILQVARGLSTAPQHTPQHSFKSAPPPSVLNHVAQPAVQQSSSSSTYAPEFGSEANEEAYGLEEEGEVTSVYVRNLSPNVTEYEIDQEFRSFGKIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGGAAAARGGRRGRGRGSYQTDAPRGRFGGRGPGRGNTQDASEYTRLRGEGYPQRGPR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0061 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 380 IPR000504 GO:0003723
Ahy6g0061 451 MobiDBLite consensus disorder prediction 392 451 - -
Ahy6g0061 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Ahy6g0061 451 SMART rrm1_1 316 388 IPR000504 GO:0003723
Ahy6g0061 451 MobiDBLite consensus disorder prediction 280 297 - -
Ahy6g0061 451 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Ahy6g0061 451 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Ahy6g0061 451 MobiDBLite consensus disorder prediction 280 299 - -
Ahy6g0061 451 SUPERFAMILY RNA-binding domain, RBD 312 420 IPR035979 GO:0003676
Ahy6g0061 451 Gene3D - 285 444 IPR012677 -
Ahy6g0061 451 CDD RRM_SF 317 388 - -
Ahy6g0061 451 Gene3D - 6 133 - -
Ahy6g0061 451 PANTHER GB|AAD20086.1 9 445 - -
Ahy6g0061 451 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 445 IPR039539 -
Ahy6g0061 451 CDD NTF2 10 130 IPR018222 -
Ahy6g0061 451 SUPERFAMILY NTF2-like 10 129 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0061 Ahy-Chr6 867744 873082 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0061 - - gmx:100787900 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1407 16 28514205 28519508 Ahy6g0061 6 867744 873082 hybridization