Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1407 ATGGCGTCGTCATACCCTGGTTCCGTCAGTGCTGCCCAGGTGGGTTCCTACTTTGTTGGACAGTACTACCAAGTTCTGCGGCAACAGCCCAATCTGGTTCACCAGTTCTACTCTGATTCCAGCAGCATGGTTCGCGTTGACGGAGATTCCACCACGACTGCTTCCGATGTCCTGCAAATTCACTCTATCGTCACCTCACTGAATTTTATTACAATTGAGATCAAGACAATCAATTCTCTCGATTCTTGGGATGGAGGTGTGCTTGTAGTTGTCTCAGGTTCTGTCAAGATGAAGGATATCAGTGGGAGACGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTACTGAATGATGTTTTTCATTTTGTTGATGATGGAGTAGTATACTCAAATCTGGCACCAGTGGCATCCGAAAAGATTGACACACAACATGAATCAACGTCTCTTGCAGAGCCACCAGCTCCAGATTATGATTTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTGCATATAGGTGATGACCCGGTGGACAAATATAGTCTTCCTGAGCAACAGGAACAGCAGCTACATGAAGATCTTGAAGATGAAATTGTGGTTGAAGAAACTCCTGTAGAGGAGACATCACCCCGTCAAAATGTTGCACATACCACCCATGAAATCCCTGTTTCTCATGTGGAGGAGTCTTTAGAGGAGCCTCCCAAGAAAACTTACGCATCTATTTTGCAAGTTGCTAGAGGGCTGTCAACTGCGCCACAGCATACACCACAGCATTCCTTTAAAAGTGCCCCACCTCCTTCAGTATTAAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCCTCATCTACGTATGCCCCTGAGTTTGGTTCTGAGGCTAATGAGGAAGCCTATGGACTAGAAGAAGAAGGAGAAGTGACTTCTGTCTACGTGAGGAACTTGTCTCCTAATGTCACTGAATATGAGATCGACCAGGAGTTTAGAAGTTTTGGAAAAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCTTTTGTGGAGTTTGAAGACATTATTGGTGTTCAAAATGCTCTTCAGGCATCTCCCATACAATTGGCTGGTAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCGGTGCGGCAGCAGCTCGTGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAACGGATGCTCCAAGGGGGCGTTTTGGTGGTAGGGGACCGGGCAGGGGAAATACTCAGGATGCATCAGAGTATACCAGACTAAGAGGTGAAGGTTATCCTCAGCGTGGTCCGCGATGA 1353 0.4649 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMVRVDGDSTTTASDVLQIHSIVTSLNFITIEIKTINSLDSWDGGVLVVVSGSVKMKDISGRRKFVQTFFLAPQEKGYFVLNDVFHFVDDGVVYSNLAPVASEKIDTQHESTSLAEPPAPDYDLEEEAREYVNSVHIGDDPVDKYSLPEQQEQQLHEDLEDEIVVEETPVEETSPRQNVAHTTHEIPVSHVEESLEEPPKKTYASILQVARGLSTAPQHTPQHSFKSAPPPSVLNHVAQPAVQQSSSSSTYAPEFGSEANEEAYGLEEEGEVTSVYVRNLSPNVTEYEIDQEFRSFGKIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGGAAAARGGRRGRGRGSYQTDAPRGRFGGRGPGRGNTQDASEYTRLRGEGYPQRGPR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1407 450 Gene3D - 284 443 IPR012677 -
Ahy16g1407 450 SUPERFAMILY RNA-binding domain, RBD 311 419 IPR035979 GO:0003676
Ahy16g1407 450 Gene3D - 6 133 - -
Ahy16g1407 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Ahy16g1407 450 SMART rrm1_1 315 387 IPR000504 GO:0003723
Ahy16g1407 450 MobiDBLite consensus disorder prediction 391 450 - -
Ahy16g1407 450 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Ahy16g1407 450 CDD RRM_SF 316 387 - -
Ahy16g1407 450 MobiDBLite consensus disorder prediction 209 241 - -
Ahy16g1407 450 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Ahy16g1407 450 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Ahy16g1407 450 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 444 IPR039539 -
Ahy16g1407 450 PANTHER GB|AAD20086.1 9 444 - -
Ahy16g1407 450 CDD NTF2 10 130 IPR018222 -
Ahy16g1407 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 379 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1407 Ahy-Chr16 28514205 28519508 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1407 - - gmx:100787900 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1407 16 28514205 28519508 Ahy6g0061 6 867744 873082 hybridization