Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0008 ATGGTGGGAGTTATATCGTTGCTTACAGGGAGGGCTGGTCCAAGTGGCTTTGGATCAGCTTCAACTGCAGAGGAGGTTACTCATGGAATTGATGCCTCCAACCTCACTGCTATTATCACTGGAGGAGCAAGTGGCATTGGATTGGAGACAGCGAGAGTGCTGGCTCTGAGGAATGTACACGTCATCATTGGTGTACGGAATACAGTTAGTGCGAAGAAGGCGAAGGAAGAGATTGTTGAGCAGAAGCCGTCCGCCCGTGTTGACATTCTGAAGCTCGATTTGTGCTCTCTCACATCTGTTGCTTCTTTTGTCCACAACTTCCTTGCTCTTCATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTTCAAGCTGTCAGAGAATGGGGTTGAAACACAGTTTCATACTAACCATCTTGGACATTTCTTGTTGACAAACTTGCTCCTCGAGAAAATGAAACAAACTGCGGAAGCCACAGGAATTGAAGGGAGGATAATAAATTTGTCATCAATTGCCCACAACTACACTTACAGAAAGGGGATTAGATTTCAAAAGCTGAATGAACGAAAAGGTTATGATAACAAGAAGGCGTACGGCCAGTCCAAGTTATGCAACATACTGCACTCAAATGAGCTTTCTCGTCGCCTACAGGAAGAGGGTGTGAACATCACTGTTAACTCGGTCCACCCAGGAATCATAATGACTCCTCTTATGAGACACTCTTCTTACCTAATGCATTTCCTAAAGATCTTCACCTTTTACATATGGAAGAACGTTCCACAGGGAGCAGCCACGACATGCTATGTTGCTCTGCACCCAAGCGTGAAAGGTGAATCTGGCAAGTACTTTGTGGATTGCAATAAGGTTAAACCAAGCAAATTTGCCTCAAATGAACAGCTTGGAAGGAAACTCTGGGATTTCAGTGAAAGACTCATCAATTCAATTTCTAAAGCTTAA 972 0.4393 MVGVISLLTGRAGPSGFGSASTAEEVTHGIDASNLTAIITGGASGIGLETARVLALRNVHVIIGVRNTVSAKKAKEEIVEQKPSARVDILKLDLCSLTSVASFVHNFLALHLPLNILINNAGVMFCPFKLSENGVETQFHTNHLGHFLLTNLLLEKMKQTAEATGIEGRIINLSSIAHNYTYRKGIRFQKLNERKGYDNKKAYGQSKLCNILHSNELSRRLQEEGVNITVNSVHPGIIMTPLMRHSSYLMHFLKIFTFYIWKNVPQGAATTCYVALHPSVKGESGKYFVDCNKVKPSKFASNEQLGRKLWDFSERLINSISKA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0008 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Ahy6g0008 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Ahy6g0008 323 Gene3D - 27 320 - -
Ahy6g0008 323 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 319 - -
Ahy6g0008 323 PANTHER RETINOL DEHYDROGENASE 3 319 - -
Ahy6g0008 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Ahy6g0008 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Ahy6g0008 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Ahy6g0008 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Ahy6g0008 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0008 Ahy-Chr6 146548 153972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0008 38 296 Acyl Lipid Metabolism Gene Families AT3G55290 25.461 3.48e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0008 K11153 - gmx:100781156 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1480 16 31912406 31921953 Ahy6g0008 6 146548 153972 hybridization
Ahy6g0008 6 146548 153972 Ahy12g1129 12 28932633 28940401 PCT
Ahy6g0008 6 146548 153972 Ahy2g1031 2 25799314 25805933 PCT
Ahy12g1129 12 28932633 28940401 Ahy6g0008 6 146548 153972 PCT
Ahy2g1031 2 25799314 25805933 Ahy6g0008 6 146548 153972 PCT