Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1129 ATGGTTGGTATTTTCTCATTGGTTACAGGGAGGCCTGGACCAAGTGGTTTTGGATCTGCATCAACTGCAGAACAAGTTACCGAAGGAATTGATGCTAGTAATCTTACTTGTATTATTACAGGAGGAGCGAGCGGTATAGGAATGGAGACGGCGCGAGTGCTAGCACTTCGAAAGGCCCACGTCATCATCGCAGCGAGGAACATGGAGTCCGCAAAGGAAGCAAAACAACTCATATTACAACAAAATGAGTCTGCTAGAGTGGAAATAATGAAACTTGACCTTACCTCTGTCAAATCTGTTAGATCTTTTGCAGAAAATTTCCTCGCTCGTGATCTTCCCCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTACCAACGTTCAGAGGATGGGATTGAGATGCAGTTCGCAACAAACCATCTTGGGCATTTCCTCTTAACAAATCTTCTTCTTGAGAAAATGAAACAAAGCGCAAAAGCAAGTGGAATTGAAGGAAGGATTATAAATCTGTCATCAATTGCTCATACCTATACTTACGAAGAGGGGATTCGATTTGATAACCTTAACGATGAAGCTGGTTATTCTGACAAGAGGGCTTACGGGCAGTCCAAGCTAGCTAATATATTGCACGCAAATGAACTCTCTCGCCGTTTGAAGGAAGAAGGTGTGAACATCACAGCCAATTCAGTGCACCCCGGAGTGATAATGACTCCTCTTATGAGACATTCTACTCTACTCATGAATTTTCTGAAGATGTTCACATTTTTCATATGGAAAAGCGTTCCACAGGGAGCAGCCACAACATGCTACGTTGCTCTGCATCCAAGCGTGAAAGGTGTGAGTGGGAAGTACTTTCTGGATTGCAATGAGTTCCAACCAAGTGCATTTGCCTCAAACGAACTCTTAGGAAGAAAACTCTGGGACTTCAGCAACAAGTTGATCAACTCAATTTCCAAACCTTGA 972 0.4311 MVGIFSLVTGRPGPSGFGSASTAEQVTEGIDASNLTCIITGGASGIGMETARVLALRKAHVIIAARNMESAKEAKQLILQQNESARVEIMKLDLTSVKSVRSFAENFLARDLPLNILINNAGVMFCPYQRSEDGIEMQFATNHLGHFLLTNLLLEKMKQSAKASGIEGRIINLSSIAHTYTYEEGIRFDNLNDEAGYSDKRAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSTLLMNFLKMFTFFIWKSVPQGAATTCYVALHPSVKGVSGKYFLDCNEFQPSAFASNELLGRKLWDFSNKLINSISKP* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1129 323 CDD retinol-DH_like_SDR_c_like 38 310 - -
Ahy12g1129 323 Pfam short chain dehydrogenase 37 183 IPR002347 -
Ahy12g1129 323 Gene3D - 26 320 - -
Ahy12g1129 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Ahy12g1129 323 Coils Coil 68 88 - -
Ahy12g1129 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Ahy12g1129 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Ahy12g1129 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Ahy12g1129 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Ahy12g1129 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Ahy12g1129 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Ahy12g1129 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Ahy12g1129 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Ahy12g1129 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1129 Ahy-Chr12 28932633 28940401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1129 35 242 Miscellaneous Gene Families AT2G29340 28.436 4.09e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1129 K11153 - gmx:100807056 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1129 12 28932633 28940401 Ahy2g1031 2 25799314 25805933 hybridization
Ahy16g1480 16 31912406 31921953 Ahy12g1129 12 28932633 28940401 PCT
Ahy6g0008 6 146548 153972 Ahy12g1129 12 28932633 28940401 PCT
Ahy12g1129 12 28932633 28940401 Ahy16g1480 16 31912406 31921953 PCT
Ahy12g1129 12 28932633 28940401 Ahy6g0008 6 146548 153972 PCT