Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3089 ATGCGAACCTTTATCGTACACAGCTCCAAGCTCATCAAAAGCAAGATAAAAAATATCCCTATGATTCAGCATCACCATCACCATCATCCGAATTTCAATCCCACGCGAGCAATGTCGCAATCCACCTCGATCCCGAAGAAAATGCAGAGGGTTCGCGACCACGGCTACGACAACTACATGGAAGTCGAGAAGAAAACTCGGAAGGTCCTCAAGGTCCAGAACATCATCCTCAACGAGCACAACCAATCGCTCCCAATCTCGCGCCTCGAAACCCTAGCGCACCGCATAGGCTTCACGCGCAACACAGTCGGTGCTTTCATCCTTAAGTTCCCTCACGTCTTCGAAATCTTCGAGCACCCCGTGCAGCGCGTGCTCTTCTGCCGCCTCACGCGCCAGGCAATCCTCCAAATCAAGCAGGAGAATGAAGCATTGCTCGCTCAGGTTCCACGCGCCGTCACGTGCCTCCGCAAGCTTCTCATGATGTCGAACACGCAGCGGCTTCGCCTCGAGCACGTGAGGATCGCACGCTCCGCTCTAGGGTTACCGGACGACTTCGAATTCTCGGTGGTTTTAAGGTATCCTCAATTTTTTCGCTTAGTTGATGCAAATGAGAGAAGGAACAAGTACATTGAGCTTGTAGAAAGAGAACCTAGTTTAGCAGTCTGTGCAATTGAGAATGTTAGAGAGAGAATTTACAGGGAGAGAGGTGGTGATGCTGAAGATGTTAGGTTCTCATTTCTAATTGATTTTCCACCAGGTTTTAAGATTGGGAAGTATTTTAAGATTGCAATGTGGAAGTGGCAGAGGTTACCTTATTGGTCCCCTTATGAGGATGTTTCTGGCTTTGATTTGAGGTCGATTGAGGCGCAAAAGAGGATGGAGAAGAGGGCTGTTGCCTCAATCCACGAGTTGTTGTCATTGACCGTGGAGAAGAAGATTACCTTGGAGAGGATCGCACACTTCCGGCAGGCGATGAACCTGCCGAATAAGTTGAAGGATTTCCTTCTCCAGCACCAGGGGATTTTCTACGTGTCGACAAGGGGGAACCAGGGGAAGCTCCACACGGTTTTCCTGCGAGAGGCTTATAGGAAGGGTGAGTTGATTGAGCCAAATGATCTGTATTTGGCGCGGAGGAAGCTGGCTGAGTTGGTCTTGTTGAGCCCCCGGAAGGCGAGGATTGACAGGGAATTGGTTGGATACAGGAGAAGCAGGTTGGATGATGAGATGGGGCAGATAACAAGGGTAGCTGTGGAGGATGCCTATGAGGACTTCAAGGGTGAAGATGTAATGGATCAGGATAAGGATGAAGAGGGAAATTTGACCTCGGACATAGGTTCAGATGTTGATTCGGATGTTGGAGATGAAGACAATAGTTTTGATGAAGATAGTGTATCAAGGCAAGAAACATCATAA 1413 0.4883 MRTFIVHSSKLIKSKIKNIPMIQHHHHHHPNFNPTRAMSQSTSIPKKMQRVRDHGYDNYMEVEKKTRKVLKVQNIILNEHNQSLPISRLETLAHRIGFTRNTVGAFILKFPHVFEIFEHPVQRVLFCRLTRQAILQIKQENEALLAQVPRAVTCLRKLLMMSNTQRLRLEHVRIARSALGLPDDFEFSVVLRYPQFFRLVDANERRNKYIELVEREPSLAVCAIENVRERIYRERGGDAEDVRFSFLIDFPPGFKIGKYFKIAMWKWQRLPYWSPYEDVSGFDLRSIEAQKRMEKRAVASIHELLSLTVEKKITLERIAHFRQAMNLPNKLKDFLLQHQGIFYVSTRGNQGKLHTVFLREAYRKGELIEPNDLYLARRKLAELVLLSPRKARIDRELVGYRRSRLDDEMGQITRVAVEDAYEDFKGEDVMDQDKDEEGNLTSDIGSDVDSDVGDEDNSFDEDSVSRQETS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3089 470 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 23 445 IPR045040 GO:0003723
Ahy5g3089 470 Pfam Plant organelle RNA recognition domain 51 387 IPR021099 GO:0003723
Ahy5g3089 470 MobiDBLite consensus disorder prediction 424 441 - -
Ahy5g3089 470 PANTHER PROTEIN ROOT PRIMORDIUM DEFECTIVE 1 23 445 IPR040295 -
Ahy5g3089 470 MobiDBLite consensus disorder prediction 25 44 - -
Ahy5g3089 470 MobiDBLite consensus disorder prediction 424 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3089 Ahy-Chr5 112563936 112566104 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3089 - - adu:107491171 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3499 15 157734694 157736894 Ahy5g3089 5 112563936 112566104 hybridization