Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2478 ATGAGTAGAAAGAAAAGGGGACTTTTGTTCAACATAGAAGAAGTTGCAGTGGACTTCTTCTTCAACCATCTCTTGAAGGAGAAGCCATCAATTCCATTCTTCATTCCTTTGCTTTTGGTTGCTTGGGCTATTGAGAAATGGATGTTCTCTTTCTCCACCTGGGTTCCCATTCTTCTTGTTGTGTGGATAGCTATACAGTATGGTAGGTATCAACGGAAACTACTTGTTGAGGACTTGGATAAGAAATGGCAACGAATCATACTGAACACATCGCCGATCACTCCGTTGGAGCATTGCGAGTGGCTGAATAAGCTCTTGACTGAAATCTGGTCCAGCCATTATAACCCAAAGCTTTCGATAAGGTTGTCGGCGATAGTTGAGAAACGTTTAAAGCTCCGGAAGCCAAGACTTATAGAAAGAGTCGAGCTGCAGGAGTTTTCATTGGGTTCATGCCCTCCTAGTGTGGGTCTTCAAGGGATGCGATGGTCAACTATCGGTGATCAGCGAGTCCTACAACTGGGTTTGGATTGGGACACAAATGAAATGAGCATTTTGATGCTTGCGAAGCTTGCAAAGCCATTGATCGGAACTGCTCGGATTGTGATTAATAGTCTTCATATCAAGGGTGATCTTCTATTTACACCAATCCTGGATGGAAAAGCACTTTTGTATTCATTTGTATCAACTCCTGAGGTGAGAATAGGAATCGCCTTTGGAAGCGGTGGAAGCCAGTCACTTCCTGCCACTGAATGGCCCGGTGTTTCTTCTTGGCTGGAAAAGCTTTTTACTGACACCTTGGTTAAGACCATGGTGGAACCTCGGCGCCGCTGTTTTACTTTGCCTGCTGTTGATTTGAGGAAGAAGGCTGTTGGTGGCATTATATATATTAGAGTGATTTCGGCTAGTAAACTTTCAAGGAGTTGCTTCAAGGGGGGATCTAGGAGGCCTCAAAATGGTACAACCAATAGTTTCTCGGTGGACAGTTTTGATGACAAGGACCTACAAACATTTGTCGAGGTAGAAGTTGGGGACTTAATCAGGAGAACAGATGTCAGACTTGGATCAACCCCTCGATGGGATGCACCATTTAATATGGTTTTACATGATAACACTGGAAACCTTCGTTTCAATCTTTATGAGTCTCATCCCAACAATATCAAGTGTGACTACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCAACGATATTCTGGGCAATAGGACCCGATTCTGGGGTCATAGCAAAGCAAGCACAATTTTGTGGAGATGAAGTTGAAATGATGGTCCCATTTGAGGGGGCTAACCCCGGGGAGTTGAAGGTCAGCATTGTAGTAAAAGAGTGGCAATATTCTGATGGTACGCATAGCTTGAACAGTCTCCGGTCGAGTTCTCAGTCATCAGTTAGTGGATCATCAAATATTCAGTTAAGAACTGGAAGGAAACTTAACATAACTGTTATGGAAGGAAAGGATCTCGCTGCAAAAGATAAATCTGGAAAGTTTGATCCATATGTCAAACTTCAGTATGGAAAGACTGTCCTGAAAACGAAGACTGCCCATGGTTCGAATCCTGTATGGAACCAGACGTTTGAATTCGATGAGGTTAGTGGCGGTGACTACTTAAAAGTAAAAGGCTTCAGTGAAGAAATTTTCGGAGACGAAAACATTGGTAGTGCAAATGTAAATTTGGAAGGGCTGGTAGATGGAACAGTCAGGGATGTATGGATACCTCTAGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAATACAAGCAGTCAGGCTCGACGACCAAGAAGGATCAAATTCAAGGGGATCAGCTCCAGGCCCGGCCAATGGTTGGATAGAACTTGTTCTAATTGAGGGAAGGGATCTTGTTGCCGCTGATCTACGAGGCACAAGTGATCCATTTGTGAGGGTGCAATATGGAAACATAAAGAAAAAGACGAAGGTAATATACAAAACTCTTAACCCTCAGTGGAACCAGACCTTAGAGTTCCTCGATGATGGTAGTCCCCTTGTACTCTATGTGAAGGACCACAATGCATTGTTGGCCGCATCAAGCATAGGTGAATGTGTCGTCGAATATCAAAGGCTGCCTCCAAATGAAACGGCCGACAAGTGGATACCCCTCCAAGGTGTGAAAAGGGGAGAGATTCACATCCAAATTACTAGAAAAGTTCCGGAGTTGCAAAAGAGAAATAGTATAGATTCTGAACCTTCCTTGAGCAAATTACACCAAATTCCGAACCAGATTAAACAGATGATGATCAAGTTCCGGTCTTTAATAGAGGATGGAAACCTCGACGGGCTATCAGAAGCTTTGAGTGAGCTAGAAACTTTAGAGGATACACAAGAAGGTTACATAGTCCAATTGGAAACTGAGCAAATGATGCTTCTCAGCAAAATAAGGGAGCTAGGTCAAGAGATGATTAATTCTTCTCCTTCAATGAGTCGAAGATCTTCTGGAAGTGGAAGCTGA 2493 0.4324 MSRKKRGLLFNIEEVAVDFFFNHLLKEKPSIPFFIPLLLVAWAIEKWMFSFSTWVPILLVVWIAIQYGRYQRKLLVEDLDKKWQRIILNTSPITPLEHCEWLNKLLTEIWSSHYNPKLSIRLSAIVEKRLKLRKPRLIERVELQEFSLGSCPPSVGLQGMRWSTIGDQRVLQLGLDWDTNEMSILMLAKLAKPLIGTARIVINSLHIKGDLLFTPILDGKALLYSFVSTPEVRIGIAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISASKLSRSCFKGGSRRPQNGTTNSFSVDSFDDKDLQTFVEVEVGDLIRRTDVRLGSTPRWDAPFNMVLHDNTGNLRFNLYESHPNNIKCDYLASCEIKMRHVEDDSTIFWAIGPDSGVIAKQAQFCGDEVEMMVPFEGANPGELKVSIVVKEWQYSDGTHSLNSLRSSSQSSVSGSSNIQLRTGRKLNITVMEGKDLAAKDKSGKFDPYVKLQYGKTVLKTKTAHGSNPVWNQTFEFDEVSGGDYLKVKGFSEEIFGDENIGSANVNLEGLVDGTVRDVWIPLERVRSGELRLQIQAVRLDDQEGSNSRGSAPGPANGWIELVLIEGRDLVAADLRGTSDPFVRVQYGNIKKKTKVIYKTLNPQWNQTLEFLDDGSPLVLYVKDHNALLAASSIGECVVEYQRLPPNETADKWIPLQGVKRGEIHIQITRKVPELQKRNSIDSEPSLSKLHQIPNQIKQMMIKFRSLIEDGNLDGLSEALSELETLEDTQEGYIVQLETEQMMLLSKIRELGQEMINSSPSMSRRSSGSGS* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2478 830 PANTHER OS01G0128800 PROTEIN 1 823 - -
Ahy5g2478 830 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 330 406 IPR035892 -
Ahy5g2478 830 ProSiteProfiles C2 domain profile. 466 580 IPR000008 -
Ahy5g2478 830 ProSiteProfiles C2 domain profile. 600 713 IPR000008 -
Ahy5g2478 830 PANTHER PLANT SYNAPTOTAGMIN 1 823 - -
Ahy5g2478 830 SMART C2_3c 485 579 IPR000008 -
Ahy5g2478 830 SMART C2_3c 618 712 IPR000008 -
Ahy5g2478 830 SMART C2_3c 293 410 IPR000008 -
Ahy5g2478 830 Gene3D C2 domain 279 449 IPR035892 -
Ahy5g2478 830 Gene3D C2 domain 606 730 IPR035892 -
Ahy5g2478 830 Gene3D C2 domain 469 600 IPR035892 -
Ahy5g2478 830 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 595 IPR035892 -
Ahy5g2478 830 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 281 IPR031468 GO:0008289
Ahy5g2478 830 CDD C2 619 715 - -
Ahy5g2478 830 Pfam C2 domain 293 404 IPR000008 -
Ahy5g2478 830 Pfam C2 domain 619 715 IPR000008 -
Ahy5g2478 830 Pfam C2 domain 485 582 IPR000008 -
Ahy5g2478 830 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 612 728 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2478 Ahy-Chr5 99628783 99637914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2478 618 727 Lipid Metabolism Gene Families AT1G51570 30.328 1.79e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2478 - - gmx:100789237 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2780 15 145330272 145339373 Ahy5g2478 5 99628783 99637914 hybridization
Ahy13g2111 13 39426537 39433686 Ahy5g2478 5 99628783 99637914 PCT
Ahy3g1814 3 37503848 37508969 Ahy5g2478 5 99628783 99637914 PCT
Ahy5g2478 5 99628783 99637914 Ahy13g2111 13 39426537 39433686 PCT
Ahy5g2478 5 99628783 99637914 Ahy3g1814 3 37503848 37508969 PCT