Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2227 ATGGGTCACCAACGACTTTTGTCCAAGATTGCAACCAATGACAAGCATGGAGAGAACTCGCCATATTTTGATGGGTGGAAAGCTTATGATAGAAACCCATTTCACCCAACAAAAAATCCTCAAGGTGTTATCCAGATGGGTCTTGCTGAAAATCAGCTTTGCTTCGATCTTATTGAAGAGTGGATAAGGAACAATTCCAAAGCTTCCATATGTACTCCTGAAGGAGTGCATCTGTTTAGAGATATTGCTAACTTTCAAGACTATCATGGATTGCCACAGTTCAGAAAAGGTGTGGCGAATTTCATGTCAAAAGCAAGGGGTGGTAGGGTCAAATATGATCCTGAGCGTATATTGATGAGTGGAGGAGCAACAGGTGCAAATGAATTAATAATGTTTTGTTTGGCTGATCCTGCTGATGCATTCATGGTTCCCACTCCTTATTATCCAGCATTCGTGCGTGATCTTGGTTGGAGAACTGGGGTGCAACTTATTCCTGTTCATTGTGATAGTTCTAACAATTTCAAAATAACAAGAGAAGCCCTTGAAGAAGCTTATCGTGAAGCAAAACAAAACAACATCAATGTGAAAGGTTTGATCATAACAAACCCTTCCAACCCTTTGGGAACCACATTGGACAAAGAAACCCTTAAAAGCCTTGTGAGGTTCATCAATGAGAAGAACATTCACTTAGTTTGTGATGAAATTTATGCCGCCACTGTTTTCACCACTCCAAGATTTGTGAGTATCTCTGAAGTCATGCTAGAAATGGAGTGCAAGAAAGAACTCATTCACATAATCTATAGTTTATCAAAGGATATGGGGTTACCGGGTTTTAGGGTTGGCATTGTTTATTCCTACAATGATGATGTTGTGAGTTGCGGCCGAAAAATGTCGAGTTTCGGATTAGTCTCTTCTCAGACTCAACATTTTCTAGCATCGTTACTTTCTGACGAGGATTTTATCGACAGATATTTAGAAATTAGCAAAAGGAGGCTCGCGAAGCGTCATAGTTTCTTCACGAAAGGGCTCGAAACGGTTAACATTACTTGCTTGCCAAGCAATTCAGGACTATTTTGTTGGATGAACTTGAGGAGGCTATTGAAGGAGAAAACTTTTGAAGGTGAAATGAAGCTTTGGCGTGTGATCATCAATGAGGTGAAGCTCAATGTTTCACCGGGGTCAAGTTTCAATTGTTCCGAGCCTGGTTGGTTTAGGGTTTGCTTTGCTAACATGGATGATGAGACTGTGGAGGTTGCATTGAAAAGGATTAGGGCTTTTGTTGGGAGAGAAACTAATAATGGGAAAAGGGTTGAACTCAAACGTTGGAAAAGCATTAATACTAATAAGTTAAGGCTAAGCTTCAACTCTAGAAGGTTTGATGAGAATGTTATGTCACCTCATTCACCAATGCCTCACTCACCCCTTGTTCGTGCCACTTAA 1440 0.4056 MGHQRLLSKIATNDKHGENSPYFDGWKAYDRNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIRNNSKASICTPEGVHLFRDIANFQDYHGLPQFRKGVANFMSKARGGRVKYDPERILMSGGATGANELIMFCLADPADAFMVPTPYYPAFVRDLGWRTGVQLIPVHCDSSNNFKITREALEEAYREAKQNNINVKGLIITNPSNPLGTTLDKETLKSLVRFINEKNIHLVCDEIYAATVFTTPRFVSISEVMLEMECKKELIHIIYSLSKDMGLPGFRVGIVYSYNDDVVSCGRKMSSFGLVSSQTQHFLASLLSDEDFIDRYLEISKRRLAKRHSFFTKGLETVNITCLPSNSGLFCWMNLRRLLKEKTFEGEMKLWRVIINEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVEVALKRIRAFVGRETNNGKRVELKRWKSINTNKLRLSFNSRRFDENVMSPHSPMPHSPLVRAT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2227 479 Coils Coil 171 198 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 228 251 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 294 317 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 262 286 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 159 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 192 216 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 79 95 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 46 72 - -
Ahy4g2227 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 116 136 - -
Ahy4g2227 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 268 281 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ahy4g2227 479 Pfam Aminotransferase class I and II 44 423 IPR004839 GO:0009058|GO:0030170
Ahy4g2227 479 CDD AAT_like 84 425 - -
Ahy4g2227 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 444 - -
Ahy4g2227 479 Gene3D Aspartate Aminotransferase, domain 1 32 422 IPR015422 GO:0003824
Ahy4g2227 479 SUPERFAMILY PLP-dependent transferases 12 428 IPR015424 -
Ahy4g2227 479 Gene3D - 66 317 IPR015421 GO:0003824
Ahy4g2227 479 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2227 Ahy-Chr4 118428158 118432909 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2227 K20772 - gmx:100775969 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2535 14 132143972 132148770 Ahy4g2227 4 118428158 118432909 hybridization
Ahy4g2227 4 118428158 118432909 Ahy12g0176 12 2997920 3002644 PCT
Ahy4g2227 4 118428158 118432909 Ahy2g0206 2 2392696 2398269 PCT
Ahy12g0176 12 2997920 3002644 Ahy4g2227 4 118428158 118432909 PCT
Ahy2g0206 2 2392696 2398269 Ahy4g2227 4 118428158 118432909 PCT