Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0176 ATGGTGGGTTTGAGTTCTAAGAGCTATGAGCTTCTATCAAAGATTGCAACCAATGACAAACATGGAGAGAACTCTCCTTACTTTGATGGATGGAAAGCTTATGATAGAGATCCATTTCACCCTACAAAAAACCCTCAAGGTGTTATTCAAATGGGTCTTGCTGAAAATCAGCTATGCTTTGATCTCATTGAGGAGTGGTTAAAGAAGAATCCCAAGGCTTCCATTTGCACTCCTGAAGGACTTCATCAATTCAGAGATATTGCCAACTTTCAAGACTATCATGGATTACCACAGTTCACAAGTGCTGTGGCAAAGTTTATGTCAAAAGTGAGAGGTGGTAGGGTCAAGTTTGATCCAAACCGTATATTGATGAGTGGAGGGGCAACAGGTGCAAATGAATTAATCATGTTCTGCTTAGCTGATCCTGGAGATGCTTTTCTTGTTCCTACCCCTTATTATGCAGCATATCCGCGCGATTTGTGTTGGCGAACCGGATTACGGTTGATTCCGGTTCATTGTGATAGCTCCAACAATTTCAAGATCACAAGAGAAGCTCTTGAATCATCATACAAAAAAGCTAAAGATGATAACATCAATGTGAAGGGTTTGATCATAACAAACCCTTCAAACCCTTTGGGAACATCTTTAGACCGTGACACATTGAAGAGTCTAGTGAATTTCACCAATGATAACAACATACATTTGGTGTGTGATGAAATCTATTCAGCCACGGTTTTTGATTCCCCACGGTTTGTAAGTGTTGCCGAAATCATTGAAGAAATGGATGACTCATCATGCAAGAAAGAACTCATTCACATAGTTTATAGCCTATCCAAGGACATGGGATTCCCCGGTTTTAGGGTTGGGATAGTTTATTCGTACAACGATATAGTCGTGAATTGCGGCCGCAAGATGTCGAGTTTTGGATTAGTCTCTTCCCAGACTCAACATATGCTGGCCGCAATGCTGTCAGACGACGAATTTGTGGACAATTTTCTTAAGGAAAGTTCTAGAAGACTGGCGAAACGACACGAATACTTCTCAAAGGGGCTAGAAGAAGTTAACATCAAAAGGTTTCCGAGCAATGCCGGATTATTCTATTGGATGAATCTGAGTTCATTGTTGAAAGAACAAAGCTTTGAAGCCGAAATGGCGCTATGGCGCGTGATCATCAACGAAGTGAAGCTCAATGTTTCTCCGGGATCATCTTTCAATTGCTTGGAACCAGGTTGGTTTAGGGTTTGTTTTGCAAACATGGATGATGAAACGGTTGAAGTTGCACTGAATAGAATAAGAGCATTTGTGATTGGGAAAGAGAAAACAACAAAGAAGAATAATAATAATAGGGCAAAGAAAAACAACAACGTTGTTGAAGTGAAAAAACGTTGGCAACAGAATCTTAGGTTAAGTTTCTCTTCATCAAGATTGTTGGATCATCATGAAACTGTTATGTCACCTCACATTTTGTCTCCACATTCACCAATTCCAGCTTCATCACCACTTGTTCAAGCAACATAA 1518 0.4018 MVGLSSKSYELLSKIATNDKHGENSPYFDGWKAYDRDPFHPTKNPQGVIQMGLAENQLCFDLIEEWLKKNPKASICTPEGLHQFRDIANFQDYHGLPQFTSAVAKFMSKVRGGRVKFDPNRILMSGGATGANELIMFCLADPGDAFLVPTPYYAAYPRDLCWRTGLRLIPVHCDSSNNFKITREALESSYKKAKDDNINVKGLIITNPSNPLGTSLDRDTLKSLVNFTNDNNIHLVCDEIYSATVFDSPRFVSVAEIIEEMDDSSCKKELIHIVYSLSKDMGFPGFRVGIVYSYNDIVVNCGRKMSSFGLVSSQTQHMLAAMLSDDEFVDNFLKESSRRLAKRHEYFSKGLEEVNIKRFPSNAGLFYWMNLSSLLKEQSFEAEMALWRVIINEVKLNVSPGSSFNCLEPGWFRVCFANMDDETVEVALNRIRAFVIGKEKTTKKNNNNRAKKNNNVVEVKKRWQQNLRLSFSSSRLLDHHETVMSPHILSPHSPIPASSPLVQAT* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Ahy12g0176 505 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Ahy12g0176 505 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Ahy12g0176 505 CDD AAT_like 89 433 - -
Ahy12g0176 505 Gene3D - 71 325 IPR015421 GO:0003824
Ahy12g0176 505 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 7 448 - -
Ahy12g0176 505 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Ahy12g0176 505 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ahy12g0176 505 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 448 - -
Ahy12g0176 505 SUPERFAMILY PLP-dependent transferases 17 435 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0176 Ahy-Chr12 2997920 3002644 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0176 K20772 - gmx:100813347 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0176 12 2997920 3002644 Ahy2g0206 2 2392696 2398269 hybridization
Ahy14g2535 14 132143972 132148770 Ahy12g0176 12 2997920 3002644 PCT
Ahy4g2227 4 118428158 118432909 Ahy12g0176 12 2997920 3002644 PCT
Ahy12g0176 12 2997920 3002644 Ahy14g2535 14 132143972 132148770 PCT
Ahy12g0176 12 2997920 3002644 Ahy4g2227 4 118428158 118432909 PCT