Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2186 ATGTCTTCCCCAAGCAAGCGGCGAGAGATGGACTTAATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAGGAGTTTTATGTTTATTTCGATGGACCCAATGAAAGTCCTTATCATGGTGGTGTATGGAAAGTAAGAGTTGAGCTACCTGATGCTTATCCTTATAAATCTCCTTCTATAGGATTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGGTCGGTTTGTCTGGATGTTATCAACCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAAGTGTTCCTACCACAGCTTCTTCTGTATCCCAATCCATCAGACCCTTTAAATGGAGAAGCTGCCGCTTTACTGATGCGAGATCGAGCTAGTTATGAACAAAGGGTTAAGGAGTACTGTGAGAAGTATGCTAAAGCTGAAGATGTAGGAGCTGCACCAGAAGAGAAATCAAGTGATGATGAGGAAATGAGTGAAGATGAATATGATTCAAGTGATGAACAGGTTGCTGGTAAAGCAGATCCTTAG 555 0.4126 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVYFDGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRASYEQRVKEYCEKYAKAEDVGAAPEEKSSDDEEMSEDEYDSSDEQVAGKADP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2186 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Ahy4g2186 184 MobiDBLite consensus disorder prediction 149 184 - -
Ahy4g2186 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Ahy4g2186 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Ahy4g2186 184 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Ahy4g2186 184 SMART ubc_7 4 148 - -
Ahy4g2186 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Ahy4g2186 184 Coils Coil 132 152 - -
Ahy4g2186 184 CDD UBCc 7 143 IPR000608 -
Ahy4g2186 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Ahy4g2186 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2186 Ahy-Chr4 117053440 117056914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2186 26 178 Miscellaneous Gene Families AT1G17280 21.765 4.34e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2186 K10576 - gmx:100804969 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2479 14 129912832 129916275 Ahy4g2186 4 117053440 117056914 hybridization
Ahy4g2186 4 117053440 117056914 Ahy12g0075 12 1754628 1757674 PCT
Ahy4g2186 4 117053440 117056914 Ahy2g0036 2 399733 402912 PCT
Ahy12g0075 12 1754628 1757674 Ahy4g2186 4 117053440 117056914 PCT
Ahy2g0036 2 399733 402912 Ahy4g2186 4 117053440 117056914 PCT