Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0075 ATGTCCTCCCCAAGCAAGCGGCGAGAGATGGACCTTATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGAATGCAAGAGTTTTATGTCCATTTCAATGGACCTAATGAGAGTCCTTATCATGGAGGTGTTTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTGTTAATAAGATCTATCATCCAAATGTCGATGAGATGTCAGGATCGGTTTGTCTAGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAGGTTTTTCTTCCACAACTTCTGTTATATCCGAATCCATCAGACCCCTTGAATGGAGAAGCTGCTGCTTTAATGATGCGTGATCGAGCTTCTTATGATCAAAGGGTTAAAGAATATTGTGAGAAGTATGCTAAGGCTGAAGACATAGGAGATGCAACAGAAGACAAGTCTAGTGATGATGAGGAACTAACTGAAGATGAATATGATTCAAGTGATGAACAAGTGGCTGGTAAGGCAGATCCATAG 555 0.4072 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFNGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRASYDQRVKEYCEKYAKAEDIGDATEDKSSDDEELTEDEYDSSDEQVAGKADP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0075 184 MobiDBLite consensus disorder prediction 156 173 - -
Ahy12g0075 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Ahy12g0075 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Ahy12g0075 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Ahy12g0075 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Ahy12g0075 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Ahy12g0075 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Ahy12g0075 184 SMART ubc_7 4 148 - -
Ahy12g0075 184 CDD UBCc 7 143 IPR000608 -
Ahy12g0075 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Ahy12g0075 184 MobiDBLite consensus disorder prediction 150 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0075 Ahy-Chr12 1754628 1757674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0075 3 115 Miscellaneous Gene Families AT3G17000 23.140 3.50e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0075 K10576 - gmx:548025 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0075 12 1754628 1757674 Ahy12g0075 12 1754628 1757674 ECH
Ahy12g0075 12 1754628 1757674 Ahy2g0036 2 399733 402912 hybridization
Ahy14g2479 14 129912832 129916275 Ahy12g0075 12 1754628 1757674 PCT
Ahy4g2186 4 117053440 117056914 Ahy12g0075 12 1754628 1757674 PCT
Ahy12g0075 12 1754628 1757674 Ahy14g2479 14 129912832 129916275 PCT
Ahy12g0075 12 1754628 1757674 Ahy4g2186 4 117053440 117056914 PCT