Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1397 ATGGAACGCAAGAAAACGCTGACGATGAATTGGGCCGGCCTCAGCGACGACAACGAGGACGAGCACTTCTTCGAGATCACTAACCGCCTCAACACGATTTGTCACCGTGACTTGGCTTCTTCCTCCGACGACGATGAGGAATTCGAAGACCCCCGCACATCGTTCTCCGCAACCATGTCTACCACACAATATCGAACATTCTCACGAATGTTTACAAGAACAGCCTCCATTCAACCCACCCCCAATTACGACATTTGGATGGCTGCACCAGGATCCATCACAGAAAGACGAAGAAGATTACTTGGAAGCATGGGATTGGATGAAAACAAAGTCTCATTAAAGGTCACCAGTTTCGCTCTTGATCGTGCTGTCACCAAGAAGCTCGATAAAATGAATAAGAAGGCTCCTATCCCTATTCCTGTTCCGCCTCGTTCTACAACAAGGGCCCCACGTTTGTTAGAAGAAGTGGCTGTTGGTTCCTCTCCTTCCCTTCCTTCCATTTCAGAAGAGCAAGAAACGAAGCATGCCCCTGTTTTGTTCTGCTTGGTGCGATCACGTTCCGAAGGGGATATTGAGATGATTTCCATGGCGAAAGCAAGGAAAGAGGAGTTCATTGGGAAGGTTTCGAAGCAGCGATTAACAAGAACCTCGTCGGAGATAGTAATGCCTCGTGCTAAGATGGTCCCCGCCGCAATGGTCCTGAAGGATCCTGCGGAGGTGAAGGCAAGGGTGGCCAATCATAACCGGAAGTCTTCGACGGCGGCGGGGGCAGGAGTGGGGGCTTTCTTTCTGATAAAGAATTTGGATACCGGGAAGGAATTTATTGTGAAGGAATATAGCGAAGACGGAATGTGGAATAAACTAAGTGATTTGCAGACGGGGAAGCAGTTAACGATGGATGAGTTTGAGAAAACTGTGGGGCATTCGAAAATTGTCAAGGAAATGATGAAGCGAGCCAAGGTGGGGAAGAAGGAAGGTATAGGAAAGATATTATCATCGAGTTCGATTTCAAAAAGTTTGAAATTAAGCAAGAAAAAGGGAGCTTCGTTCATAAAGAATGTGAAAGGTGCTGCAAGTAAAAGTTTTGGCGGGGAGAAGGAACTTAAAGAAGCTGGAGGAATTCTATCACAACCAGTGTCGGCAGAATCGAAAGCAACACAACAAGGGAAGAATGATTGGGTGAAAGTGCGACAAATTGGAAAGTCAGAGAAGGAGCTTTCGGCATTACATTTGTGTCAAGAGTTTCAAGCACATGAAGGAGGGATTTCGATCATAAAGTTTAGTTTGGATGGAAGGTTTTTGGCAAGCGGCGGAGAAGATAAAGTAATTCATGTGTGGGAAGTACAAGAATGCGGTCTTACGCCGTCTATACCAGGGCAAACAGAGGCTCCACCAGACAAGAAGAAAAGAGGGAAAGGGAGCTCAATTCCAGATTGGGTACAAGTCCCTGAGTTTGTTTTTAACCTTTCGGAGAAGCCATATTGCTCTTTTAACGGTCATTTGGATGAAGTCTTGGATTTGTCTTGGTCCAAATCTCAATTACTTCTATCCTCTTCGATGGACAAAACAGTGAGATTATGGGACCTAGAAACTAAAGCATGCTTGAAGTTCTTTGCACACAACGACTACGTAACTTGCATACAGTTCCATCCTATAGACGAAAATTATTATATTAGTGGCTGCCTTGATGCTAAGGTTAGAGTATGGAGCATCCCTGCACGTCAGGTTGTGGATTGGACAGACATCGAAGAAATGGTTACTGCAATTACTTACACCCCGGATGGCCATGGTGCTATAGTTGGTACGATTAAAGGGGATTGCCGCACTTTCAAAGTACAAGATCACCAGTTAAGTGACCCAGGGACAATTAACTTCACACAGAAGAAGAAATCTCAGATTAAAAAGATTACTGGTTTCCAATTTGCCCCAAGGAACACATCAGAAATTCTTATTACTTCAGGCGATTCTAGGATAAGAATAGTGGACGGTTCAAAAGTCCTTCACAAGTTCAGAGGTTTTCGAAATGGAAATAGCCAAATTGCAGCTTCATTTAGTCCAAATGGAAGATACATAATCAGTGCAAGTGAGGATTCTCAAGTATTTGTTTGGAAATATGAAGAGCCTCGTAATGCAAACGCTGCAAAAGCTAAGACTATAACCGTGACCCAATCTTATGAACAGTTCCAATGTAAAGATGTAACAGTAGCAATACCATGGCCTTGTACAATTAAGAGTGATCCATCACAAGCGCCAGTGATTAACAACGCAAAAAAGAACACAAAACGCGGCGGGGATGATAATAAGAAAGCGTTGCCTCCTCTTCCAAAGAAAAACAATAACCACGGAAATAACGGAACTGATGGTAACGTAGCCTCGGCCGCACCGGATCACGACTCTTCAGCATATTCAAACGCAGAATCAGGCGTTGGAGATTCATCTAATAAAGTTGAGGCCACAGTAGAAGGTGATGGCACTTCTCAAGAAGAAGGTGAGGCAGTTTCTAGGGATAATTCAGGATTAGGTGATTCAGTTGCATCAAGTTCTGCACCAAATAGTCATGGCGATTCATCTGCTACAACTGCTGCTACTGCATCTTCAAATTTTTTGTTAAGTGATGTTAGCAACAATAACCCAGCTACAATGAATCCTTCAGCATGGGGCTTGGTGATTGTGACAGCTGGCTTTGAAGGTGAAATACGGTGTTACCAAAACTTTGGGTTGCCAAAAAAATTGGGGCTTCAAGCCAATCTTTTCGGAGGCCCTACATAA 2769 0.4413 MERKKTLTMNWAGLSDDNEDEHFFEITNRLNTICHRDLASSSDDDEEFEDPRTSFSATMSTTQYRTFSRMFTRTASIQPTPNYDIWMAAPGSITERRRRLLGSMGLDENKVSLKVTSFALDRAVTKKLDKMNKKAPIPIPVPPRSTTRAPRLLEEVAVGSSPSLPSISEEQETKHAPVLFCLVRSRSEGDIEMISMAKARKEEFIGKVSKQRLTRTSSEIVMPRAKMVPAAMVLKDPAEVKARVANHNRKSSTAAGAGVGAFFLIKNLDTGKEFIVKEYSEDGMWNKLSDLQTGKQLTMDEFEKTVGHSKIVKEMMKRAKVGKKEGIGKILSSSSISKSLKLSKKKGASFIKNVKGAASKSFGGEKELKEAGGILSQPVSAESKATQQGKNDWVKVRQIGKSEKELSALHLCQEFQAHEGGISIIKFSLDGRFLASGGEDKVIHVWEVQECGLTPSIPGQTEAPPDKKKRGKGSSIPDWVQVPEFVFNLSEKPYCSFNGHLDEVLDLSWSKSQLLLSSSMDKTVRLWDLETKACLKFFAHNDYVTCIQFHPIDENYYISGCLDAKVRVWSIPARQVVDWTDIEEMVTAITYTPDGHGAIVGTIKGDCRTFKVQDHQLSDPGTINFTQKKKSQIKKITGFQFAPRNTSEILITSGDSRIRIVDGSKVLHKFRGFRNGNSQIAASFSPNGRYIISASEDSQVFVWKYEEPRNANAAKAKTITVTQSYEQFQCKDVTVAIPWPCTIKSDPSQAPVINNAKKNTKRGGDDNKKALPPLPKKNNNHGNNGTDGNVASAAPDHDSSAYSNAESGVGDSSNKVEATVEGDGTSQEEGEAVSRDNSGLGDSVASSSAPNSHGDSSATTAATASSNFLLSDVSNNNPATMNPSAWGLVIVTAGFEGEIRCYQNFGLPKKLGLQANLFGGPT* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1397 922 Gene3D - 399 737 IPR015943 GO:0005515
Ahy4g1397 922 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 913 - -
Ahy4g1397 922 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 571 - -
Ahy4g1397 922 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Ahy4g1397 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 537 IPR001680 GO:0005515
Ahy4g1397 922 MobiDBLite consensus disorder prediction 839 860 - -
Ahy4g1397 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 571 IPR001680 GO:0005515
Ahy4g1397 922 SUPERFAMILY WD40 repeat-like 409 709 IPR036322 GO:0005515
Ahy4g1397 922 Pfam WD domain, G-beta repeat 666 704 IPR001680 GO:0005515
Ahy4g1397 922 Pfam WD domain, G-beta repeat 534 570 IPR001680 GO:0005515
Ahy4g1397 922 Pfam WD domain, G-beta repeat 493 528 IPR001680 GO:0005515
Ahy4g1397 922 Pfam WD domain, G-beta repeat 413 446 IPR001680 GO:0005515
Ahy4g1397 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 449 IPR001680 GO:0005515
Ahy4g1397 922 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 531 - -
Ahy4g1397 922 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Ahy4g1397 922 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Ahy4g1397 922 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Ahy4g1397 922 MobiDBLite consensus disorder prediction 456 475 - -
Ahy4g1397 922 PANTHER WD REPEAT DOMAIN 44 7 913 IPR040324 -
Ahy4g1397 922 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Ahy4g1397 922 SMART WD40_4 490 528 IPR001680 GO:0005515
Ahy4g1397 922 SMART WD40_4 663 704 IPR001680 GO:0005515
Ahy4g1397 922 SMART WD40_4 572 611 IPR001680 GO:0005515
Ahy4g1397 922 SMART WD40_4 626 662 IPR001680 GO:0005515
Ahy4g1397 922 SMART WD40_4 408 447 IPR001680 GO:0005515
Ahy4g1397 922 SMART WD40_4 531 570 IPR001680 GO:0005515
Ahy4g1397 922 MobiDBLite consensus disorder prediction 796 821 - -
Ahy4g1397 922 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Ahy4g1397 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 683 713 IPR001680 GO:0005515
Ahy4g1397 922 MobiDBLite consensus disorder prediction 744 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1397 Ahy-Chr4 68057533 68062267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1397 415 779 Miscellaneous Gene Families AT5G08390 23.760 1.83e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1397 K20241 - gmx:100793299 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1588 14 81321634 81326183 Ahy4g1397 4 68057533 68062267 hybridization
Ahy4g1397 4 68057533 68062267 Ahy12g0438 12 6751141 6754297 PCT
Ahy4g1397 4 68057533 68062267 Ahy2g0395 2 5347046 5348106 PCT
Ahy12g0438 12 6751141 6754297 Ahy4g1397 4 68057533 68062267 PCT
Ahy2g0395 2 5347046 5348106 Ahy4g1397 4 68057533 68062267 PCT