Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0904 ATGCTTGTGGCATTGCTCTTGCTTCTGGCATGGAGCAATGCCGTGATAATTGTTGATGGATATGGTGGACAATGTAGTTTGAATCCAACACTTGATCCTAGACCACACAGTGTCTCAATTCTTGAGTTTGGTGCTGTTGGAGATGGCAAAACACTCAACACAATCCCTTTCCAAAATGCTGTCTTCTATCTCAAGTCATTCGCTGATAAAGGCGGCGCTCAGCTCTATGTGCCGCCCGGAAAATGGCTCACAGGAAGCTTCAACCTCACTAGCCACCTTACCCTTTTTTTGGAAAAAGGTGCTACTATTATTGGATCTCAGGATCCAACTCATTGGGATGTTGTAAAGCCCTTACCTTCTTATGGCCGAGGGCTCGAAGTTCCCGGGGGACGATACCAGAGCTTGATCAATGGATACCAGTTACATGATGTGGTCATAACAGGTAACAATGGAACCATCAACGGCATGGGATCTGTTTGGTGGGAGTGGTTTACCTTGCATACACTGAATCATAGCCGTCCTCATCTGATTGAACTCGTCGAATCTGATTATGTGGTAGTTTCAAATCTCACAATCTTGAATGCCCCGGCATACGCAATACACCCTGTTTATTGCAGCTATGTACATATTCAAAATGTATCAATTTCTGCTCCTGCAGAATCACCTTTTACTGTTGGTATAGTTCCTGATTCTTCTAATAATGTTTGTATAGAAGATTGCATTGTTGCTATGGGACATGATGCAATTTCTCTTAAAAGTGGTTGGGATGAGTATGGTGTTGCCTATGGTAGACCAACAGAGAATGTACACATTAGAAGGGTGACTTTGAGTGCATTTTCTGGCTCTACTCTTGCATTTGGTAGTGAAATGTCTGGTGGTCTTTCGAATGTTTTCGTGGAACATTCTCATGTTCTCGACTCAGATAAAGGCGTCCAGTTCAGAACAACCAGAGGTAGAGGTGGTTACATGAAAGAAATTGTTATATCTGACATACAAATGGACAATGTCTATGTTGCGATTGCGGCCACAGGTCATTGTGGTTCTCATCCTGATGACAAGTTTGATCCAAACGCTCTTCCACATTTGGATTTTATCACCTTGAAGGGTGTTATTGGCAGAAACATCACTGTTGCCGGAAGCTTTGCTGGAATAGAAGAATCCCCTTTCACCAACATATGCCTTTCCAACATAACCTTGTCTATAAACTCTATTTCAAGTGCCTGGGAATGTTCAAATGTCTTAGGATCTTCGGATTTTGTCAATCCTGAACCTTGTCCAGAACTTCGGAACCCTACAAACTCTTCCTCGTCGTGTTTCTACTTACTGAGTACCAGTGGAAGAAAAGCCTCAGCACTGTGA 1359 0.4297 MLVALLLLLAWSNAVIIVDGYGGQCSLNPTLDPRPHSVSILEFGAVGDGKTLNTIPFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATIIGSQDPTHWDVVKPLPSYGRGLEVPGGRYQSLINGYQLHDVVITGNNGTINGMGSVWWEWFTLHTLNHSRPHLIELVESDYVVVSNLTILNAPAYAIHPVYCSYVHIQNVSISAPAESPFTVGIVPDSSNNVCIEDCIVAMGHDAISLKSGWDEYGVAYGRPTENVHIRRVTLSAFSGSTLAFGSEMSGGLSNVFVEHSHVLDSDKGVQFRTTRGRGGYMKEIVISDIQMDNVYVAIAATGHCGSHPDDKFDPNALPHLDFITLKGVIGRNITVAGSFAGIEESPFTNICLSNITLSINSISSAWECSNVLGSSDFVNPEPCPELRNPTNSSSSCFYLLSTSGRKASAL* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0904 452 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 445 - -
Ahy4g0904 452 SMART pbh1 294 315 IPR006626 -
Ahy4g0904 452 SMART pbh1 232 253 IPR006626 -
Ahy4g0904 452 SMART pbh1 323 344 IPR006626 -
Ahy4g0904 452 SMART pbh1 182 204 IPR006626 -
Ahy4g0904 452 SMART pbh1 266 288 IPR006626 -
Ahy4g0904 452 SMART pbh1 205 231 IPR006626 -
Ahy4g0904 452 Pfam Glycosyl hydrolases family 28 134 413 IPR000743 GO:0004650|GO:0005975
Ahy4g0904 452 Gene3D - 28 420 IPR012334 -
Ahy4g0904 452 PANTHER PECTIN LYASE-RELATED 2 445 - -
Ahy4g0904 452 SUPERFAMILY Pectin lyase-like 32 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0904 Ahy-Chr4 15809559 15812544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0904 1 439 Glycoside Hydrolase AT3G16850 63.326 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0904 - - gmx:100806574 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2599 11 142205098 142207721 Ahy4g0904 4 15809559 15812544 PCT
Ahy1g2328 1 101262319 101265037 Ahy4g0904 4 15809559 15812544 PCT
Ahy4g0904 4 15809559 15812544 Ahy11g2599 11 142205098 142207721 PCT
Ahy4g0904 4 15809559 15812544 Ahy1g2328 1 101262319 101265037 PCT